Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01986 ATGGAGGAAGGGTATGAGACACTGAAGGACCTTGGTTCGGGGAACTTCGGAGTGGCCAAGTTGGCCAAAGACAAGAACACAGGGGAGCTTGTTGCTATCAAATACATTGAAAGGGGAAAAAAGATCGATGAGAAAGTTCAAAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATTATAAGGTTCAAAGAGGTATTTCTAACCCCTACTCATTTAGCTATTGTCCTGGAGTATGCTGGTGGTGGTGAACTCTTTGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTCCAGCAACTAATATATGGAGTTAGCTATTGTCATTCCATGCAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTATTAGACGGAAATCCGGCTCCTCGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCGGCTTTACTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTTTGTCACGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGAATATTGGGAGAATAATGAGTGTTCAATACTCCATACCTGACTATGTGCGTGTTTCTGCTGAGTGTAGGCATCTTCTCTCTCGTATTTTTGTTGCCAATCCTGCCAAGAGGATCACCATCTCGGAGATAAAACAGCACCCTTGGTTTTGGAAGAACTTGCCTAGAGAGATAATTGAGGGTGATAGAAAAGGTTACAAGGAAACACAAATAGACCAAGCAAACCAAAGTGTGGAAGAAATCATGCGGATCATACAAGAGGCAAGGACACCAGGGCTAAAAGCCAAAGCTGGTGAACTTGCTGGCACAGGTTCATCAGATGCTGTGAATGTTGATGAGGCTGAAGAGGAAGTTGATGTTAGTGGCATCTATGCCAAACTTGTGTGA 1020 0.4196 MEEGYETLKDLGSGNFGVAKLAKDKNTGELVAIKYIERGKKIDEKVQREIINHRSLRHPNIIRFKEVFLTPTHLAIVLEYAGGGELFERICNAGRLSEDEARFFFQQLIYGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFEDPEDPRNFRKNIGRIMSVQYSIPDYVRVSAECRHLLSRIFVANPAKRITISEIKQHPWFWKNLPREIIEGDRKGYKETQIDQANQSVEEIMRIIQEARTPGLKAKAGELAGTGSSDAVNVDEAEEEVDVSGIYAKLV* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01986 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Rops1g01986 339 Gene3D Transferase(Phosphotransferase) domain 1 82 269 - -
Rops1g01986 339 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01986 339 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Rops1g01986 339 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01986 339 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01986 339 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Rops1g01986 339 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Rops1g01986 339 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Rops1g01986 339 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Rops1g01986 339 PANTHER SERINE/THREONINE KINASE 5 284 - -
Rops1g01986 339 CDD STKc_SnRK2 5 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01986 Rops-Chr1 40152634 40156464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01986 5 271 CBL-interacting serine-threonine protein kinases AT4G24400 44.565 2.77e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Rops1g01986 Pkinase 1.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01986 K14498 - gmx:547790 590.497