Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01980 ATGCATTACAGAATGGGAAGAACTCGTTCTAGTAAAGCCCTAATGGACAAACAACAAGACTCGCATGTGGTGAACAAACAAAGCAACAACAACAACGGCGTCGAGGTTGTTGGTCTAAGTTCTGATGATGATGATGATATTGTTGTTGTTATTGATCAAGCGCAAGAAGAGAGACAACGAAGCAGTGACTCTGGAAGCAAGTGTTTGGATTGGGAAGGAGATGATGAGGTGGAAAGAAGAAGGAGGAAGAAGTGGAAAAAAGAAAAGAACATTGGGTTTGGAATAAAGAGGAGGAAAACGTATGGTCTTGATTTGTTGATAAATGAGAATGAGAGGGGAGAGGGTAGATGTGCTTCACAGAGGACCCGTTCTCATTTTCGAAGGAACAAGAAGAGTTTGAAGTTGGGGACTTTAAGTCAACCCATATGCCTCGATGATGATATCTCTCTATCTGATTCAGTGGAGCCTGATTTGGAAGAAGCAAACACATGCGAGGCAAACGAATCGTCTGAAGAAGAAGGAGAAGATTGTCTTGATTCTCCCGTTAGTTGGCTTCAAGAGGGTTGTGGTTATGTGAAAGAAAAATCCATTGGTAGCAGGAGGGAAGGTTCTGCAATCCCAAGGAAGAAACGCAAACTTGATCTAGAAGATTTTGGTGATTCTATTTATTGTGAGGGAGAGGTGGCTATGGAGGCTAGAGATGATGAGATGAATCCACGTATGGATTTGCCACCATTGAATTTTACTTTTCAAACTAAGAAGCCAGAACCAGAGGAAAAATCAGAAGAAGAGAAAGAATTAGATGCACTTTGGGTTGAGATGGACTACTCTCTTAATATTATCCAACACAATTCTGTTCCTGATTCTCAGGTTCAAAATAATACTGATTCTCATCATGATCAATATCCAATGGGTGAAGTTACAACAGCTGCTCTTTGTCGTCAAGGGAAGCATCATCTCATCCTTGATGAGGAAATTGGACAGATCTGTAAATATTGCTTACACGTTGCATTGGAGATCAAGTATCATGTACCTCCTTTTAGTGAAAATCCATTTGGAAAGTGGAACAGGAGAGACTCTTGCACTTTGGACAATGTAGACCAGTCTGTCATCAATGAGCTTCAGCATCGAGTCACTGGACATGATGATTATAACCATTGTGATCACACTGGGACAGTGTGGGATATAATTCCTGGAGTAAAAAACACTATGTATCCTCATCAGTGTGAAGCTTTTGAATTTCTCTGGAATAATTTAGCTGGTGGAATTTTTCTTCATAAGTTGAAAGAGCAAAAGCAATTTCCTGGTGTGAGTGGATGCATTATATCTCATGCTCCTGGCACTGGGAAAACCCGTCTCACTATTGTGTTTCTTCAGACATTCATGGAGTTATATCCAACATGCAGACCGATGATCATTGCTCCTAAGGGGATACTTCGTACATGGGAAGAGGAGTTTAAAACATGGAAAGTTGACATTCCCTTTCACAATTTGAACAATCCTGACTACTCTGGCATGGAGAGTGAGGCAGCTATGAATCTTATTGGGAAATCTGTTGGTAATGTTTCAGGGCATGTCACTAAGTTGTATTGTCGTGCAGCTAAGTTGTGTTCCTGGAAATGTAACAAAAGCATCTTGGGAATTAGCTACCCACTGTTTGTGCATCTTACCAGGGAGGGCTCCAGTGAAAGGAAAGTCCTTCTTGAACATCCTGGTTTATTAGTTCTGGATGAGGGTCACACTCCCCGTAATTCTGGAACTCGTTTGTTGAAAGCTGTGTCAGAAATCCAGACAAAAAGACGCATCATCCTATCTGGAACTCCCTTTCAGAATAATTTCAATGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAGTTTGCTGAAGGCGAGGTGGTATTTGATGACAAGAGGGGGAGCTCGAGAAATGAAAGAAAAGGGAAATGGGCGTATCTGACCAATTCACAAGGCAAACTTACCGATGATAGTAGAAGACTTCAGAAATTAAAAGAGATCAGAAACATGATTCATCCTTTCGTTCATGTATACCAGGGAACCGTACTGCAAGAGAGACTACCTGGGTTGAGGAAGTTGGTAATTATTTTAAAGCCAACCCAGTTGCAGAAGGAGATATTTGAGGAAATTCAGAAAAAAAGGAAAAGACTTGTTGCTCAGGGAAAGCAGGGATGCAAGAAAGTGCTAAAGCTGGAACATGAGGAATCTCTAACTGCTGTTCATCCTGCATTATCTGAAGGCAAGAAGTTGCAAAGGTTTAGGTTGAATCCTGAGGAAGGTGTCAAAACGAAATTTGTAATGGAACTTATCAGGCTTAGTGTGCTTTTGAATGAGAGAGTTTTGGTTTTTAGCCAATATATTAATCCTTTGAAGCTTTTGGCAAGCCAGCTTAAATATCATTTTGGTTGGAATGTAGGAAGAGAAGTGTTACAAATGCAAGGAAAAGTTGTACCAAAGCTGCGTCAAGCTTCAATTAAAGCTTTTAACGATCCCAGGAGTAAAGTAAAGGTAATGTTAGCATCAATCAAGGCTTTTTATGAAGGTATCAGTTTGGTTGGTGCCTCAAGGGTTGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGACAAGCAATAAGTCGTGCTTACCGACTTGGGCAGAAGAAATTTGTGTACACTTACCAACTGATCACAGCAGGGACAAGGGATGAGGAGAAATTTAGTAGTCAAGCTGAGAAAGATCAGTTATCAGAGTTGGTGTTCTTCAATTCAGATGGGGCTCACAATTGTCAAAACTTTTCACCTGCAGAATTGGAAGATCAAATCTTGGAAGGCATGGTTCAACAACAAAAGTTTGGACATGTATTTGAAAAAGTAGCTATTAACTATCAAGAAACAAACTCTACTTTGAAAGAGGACTTTTCTCCCCTCTTGACTAAGAGAACGACGAAGGCAGGCATTGTCAGAAAATATGGTTGTAAATATGCTCTTTGCATTCTTTGTTTTCAAGATGATTTGGATTGGGTGATGGAGTAG 3033 0.4055 MHYRMGRTRSSKALMDKQQDSHVVNKQSNNNNGVEVVGLSSDDDDDIVVVIDQAQEERQRSSDSGSKCLDWEGDDEVERRRRKKWKKEKNIGFGIKRRKTYGLDLLINENERGEGRCASQRTRSHFRRNKKSLKLGTLSQPICLDDDISLSDSVEPDLEEANTCEANESSEEEGEDCLDSPVSWLQEGCGYVKEKSIGSRREGSAIPRKKRKLDLEDFGDSIYCEGEVAMEARDDEMNPRMDLPPLNFTFQTKKPEPEEKSEEEKELDALWVEMDYSLNIIQHNSVPDSQVQNNTDSHHDQYPMGEVTTAALCRQGKHHLILDEEIGQICKYCLHVALEIKYHVPPFSENPFGKWNRRDSCTLDNVDQSVINELQHRVTGHDDYNHCDHTGTVWDIIPGVKNTMYPHQCEAFEFLWNNLAGGIFLHKLKEQKQFPGVSGCIISHAPGTGKTRLTIVFLQTFMELYPTCRPMIIAPKGILRTWEEEFKTWKVDIPFHNLNNPDYSGMESEAAMNLIGKSVGNVSGHVTKLYCRAAKLCSWKCNKSILGISYPLFVHLTREGSSERKVLLEHPGLLVLDEGHTPRNSGTRLLKAVSEIQTKRRIILSGTPFQNNFNELYNTLCLARPKFAEGEVVFDDKRGSSRNERKGKWAYLTNSQGKLTDDSRRLQKLKEIRNMIHPFVHVYQGTVLQERLPGLRKLVIILKPTQLQKEIFEEIQKKRKRLVAQGKQGCKKVLKLEHEESLTAVHPALSEGKKLQRFRLNPEEGVKTKFVMELIRLSVLLNERVLVFSQYINPLKLLASQLKYHFGWNVGREVLQMQGKVVPKLRQASIKAFNDPRSKVKVMLASIKAFYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYQLITAGTRDEEKFSSQAEKDQLSELVFFNSDGAHNCQNFSPAELEDQILEGMVQQQKFGHVFEKVAINYQETNSTLKEDFSPLLTKRTTKAGIVRKYGCKYALCILCFQDDLDWVME* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01980 1010 Pfam Helicase conserved C-terminal domain 778 885 IPR001650 -
Rops1g01980 1010 Pfam SNF2-related domain 433 740 IPR000330 GO:0005524|GO:0140658
Rops1g01980 1010 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 773 926 IPR001650 -
Rops1g01980 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 632 IPR027417 -
Rops1g01980 1010 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 552 626 IPR014001 -
Rops1g01980 1010 MobiDBLite consensus disorder prediction 1 41 - -
Rops1g01980 1010 CDD SF2_C_SNF 767 896 - -
Rops1g01980 1010 MobiDBLite consensus disorder prediction 17 37 - -
Rops1g01980 1010 SMART ultradead3 400 633 IPR014001 -
Rops1g01980 1010 Gene3D - 383 677 IPR038718 -
Rops1g01980 1010 SMART helicmild6 796 885 IPR001650 -
Rops1g01980 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 920 IPR027417 -
Rops1g01980 1010 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 960 IPR044567 GO:0080188
Rops1g01980 1010 Gene3D - 693 974 IPR027417 -
Rops1g01980 1010 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01980 Rops-Chr1 40058507 40063436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01980 783 915 RAD5 or RAD16-like Gene Family AT5G43530 38.346 3.33e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops1g01980 SNF2_N 1.8e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01980 K10875 - jre:109003751 753.821