Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01979 ATGAATGGAAAAGCCAAGTCCACCAGTGCTCAATCATCACCAAGGAGCGTGAAAGAGTTGTACAAAGAGAAAGAGCACAATTTCATAGCTTTTACTTTGCAAGAGCTCGTAGATGCAACAAATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGGAAAGTATATAGAGGAACAATTAGTCCTGAAAATGGACAAGGTAACCCAATTGTGGTTGCAATTAAAAAACTTAACACGCGTGGCTTGCAGGGACATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCATCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATGGTGAAAAAGAAATCCAAAGGCTGTTGGTTTATGAGTTCATGTCCAACAGGAGCTTGGAAGATCACCTTTTCAGTCGTTCTTTACTTCCCTTGCCTTGGAAAACAAGACTGCAGATCATGCTCGGTGCTGCTCAAGGATTACAATATCTACATGAGGGATTGGAGGTTCAGGTGATCTATCGAGATTTCAAATCTTCAAATGTGCTATTGGACAAGAAATTCCATCCGAAGCTCTCAGATTTCGGTCTCGCTAGGGAAGGCCCAACAGGTGATCAGACTCATGTATCTACTGCGGTAGTTGGGACAAGGGGATATGCTGCCCCAGAGTACATTGAAACAGGTCATCTCAGAATTCAGAGTGACATTTGGAGTTTTGGAGTGGTACTTTATGAGATCCTCACAGGAAGGAGGGCATTGGAAAGAAGCCTTCAAGCAGGGGAACAAAAGCTTATTGAGTTGGTTAAAAATTACCCTGCTGACAGTAGCAGATTCAGCATGATAATGGACCCACGTCTCAAAAACCATTATCCTCTTGATGCAGCTAGAAGAATAGCCAAGTTAGCAGATAGCTGCTTAAAGAAGAATCCTGAAGATAGGCCTTCCATGAGTCAGATAGTGGAAAGCTTAAAGCTGGCATTGCAGTGTTCACAAACTTCAAACACTAAGTATTTGACTTTTCAATCCTCTCGGTCTGAATTGGTTCAAAAAGCATGGTGGGGGGCTTCTCGGTCGGAGAGGAGAGCGGAGAAGACGATGGCGAGACCAGCACGGTGGGGCTTCTTAGCCGGTGACGACGAAGATGACGGAGCCGATGACGGAGCGGAAGGCGAGACAAGTGAGATCGCACCATGTGAGGCAGCTGTTCATGCGATTCTCTCTGACCTGTGGAAGGACGAATTGAGAACTCCCCTTCTTCATTCCTCACCTTTGCACTAA 1281 0.4473 MNGKAKSTSAQSSPRSVKELYKEKEHNFIAFTLQELVDATNGFNRMLKIGEGGFGKVYRGTISPENGQGNPIVVAIKKLNTRGLQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGEKEIQRLLVYEFMSNRSLEDHLFSRSLLPLPWKTRLQIMLGAAQGLQYLHEGLEVQVIYRDFKSSNVLLDKKFHPKLSDFGLAREGPTGDQTHVSTAVVGTRGYAAPEYIETGHLRIQSDIWSFGVVLYEILTGRRALERSLQAGEQKLIELVKNYPADSSRFSMIMDPRLKNHYPLDAARRIAKLADSCLKKNPEDRPSMSQIVESLKLALQCSQTSNTKYLTFQSSRSELVQKAWWGASRSERRAEKTMARPARWGFLAGDDEDDGADDGAEGETSEIAPCEAAVHAILSDLWKDELRTPLLHSSPLH* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01979 426 Pfam Protein tyrosine and serine/threonine kinase 48 324 IPR001245 GO:0004672|GO:0006468
Rops1g01979 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Rops1g01979 426 ProSitePatterns Protein kinases ATP-binding region signature. 49 78 IPR017441 GO:0005524
Rops1g01979 426 CDD STKc_IRAK 49 325 - -
Rops1g01979 426 FunFam PTI1-like tyrosine-protein kinase 3 129 338 - -
Rops1g01979 426 ProSiteProfiles Protein kinase domain profile. 43 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01979 426 Gene3D Transferase(Phosphotransferase) domain 1 129 348 - -
Rops1g01979 426 PANTHER OS01G0588500 PROTEIN-RELATED 11 326 - -
Rops1g01979 426 Gene3D Phosphorylase Kinase; domain 1 3 128 - -
Rops1g01979 426 MobiDBLite consensus disorder prediction 375 394 - -
Rops1g01979 426 Coils Coil 251 271 - -
Rops1g01979 426 SUPERFAMILY Protein kinase-like (PK-like) 26 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01979 Rops-Chr1 40043371 40047971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01979 1 324 Glycoside Hydrolase AT3G07070 44.311 2.34e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops1g01979 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01979 - - gmx:100782248 560.451