Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01963 ATGGCACTTTATCTTTTCTGTGGTCTTCTTGTTACCACCTTGATTTTCATGCAAACTCTGGCAGATACTTCATGCACCGATTGTTTTGTTCATTCTCGGGCAGCTTATTACCCAAATTCACAAGAAAATGGGACAGATGTTGGTGCATGTGGGTTTGGTTCCTTTGGTGCAACGGTCAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAGATGGTGTTGGCTGTGGCGCCTGTTATCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGACAATGGTGTCACCATAGTTATTACTGACCAAGGCTCAGGTCATAACACTGATTTTATTCTCAGCAAACATGCCTTTGGCCGGATGGCCCAGACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGAGAGGTTGATATTGAATATAGACGTGTTACATGCAGCTACCCATACAAAAACATAACATTCAAGATAGATGAGAGCAGCGGCAACCCTTATTACTTGGCTTTTGTGATATGGTATCAACAAGGAAAGAGAGACATAACTGCTGTTCAGCTCTGTGAGACTCAGAACTTGGTCTGCAAGTTACTGGATCGGAGCCATGGGGCAGTGTGGACTATTACCTCTCCACCAAGTGGACCTTTGTCTATAAGGATGTTGTTCAGTGATGAAGAAGAGGGAGAAGAAACATGGGTAGTTCCTGTTAATAACATACCTGAAGACTGGAAAGCTGGAGAAACATACGACTCAGGGGTACAAGTGAACCAATAA 768 0.4427 MALYLFCGLLVTTLIFMQTLADTSCTDCFVHSRAAYYPNSQENGTDVGACGFGSFGATVNGGDVSAASNLYRDGVGCGACYQVRCTNSAYCSDNGVTIVITDQGSGHNTDFILSKHAFGRMAQTTDAAASLLALGEVDIEYRRVTCSYPYKNITFKIDESSGNPYYLAFVIWYQQGKRDITAVQLCETQNLVCKLLDRSHGAVWTITSPPSGPLSIRMLFSDEEEGEETWVVPVNNIPEDWKAGETYDSGVQVNQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01963 255 Pfam Lytic transglycolase 67 136 IPR009009 -
Rops1g01963 255 Gene3D - 150 253 IPR036749 -
Rops1g01963 255 SUPERFAMILY Barwin-like endoglucanases 18 149 IPR036908 -
Rops1g01963 255 CDD DPBB_EXLB_N 30 146 - -
Rops1g01963 255 PANTHER EXPANSIN-B3 17 252 - -
Rops1g01963 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
Rops1g01963 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Rops1g01963 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Rops1g01963 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Rops1g01963 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Rops1g01963 255 Gene3D - 17 147 IPR036908 -
Rops1g01963 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Rops1g01963 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01963 Rops-Chr1 39723205 39725415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01963 11 251 Expansin Gene Family AT4G17030 41.633 1.82e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01963 - - ccaj:109799868 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01963 1 39723205 39725415 Rops2g04360 2 79420818 79422692 PCT