Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01955 ATGGATCTTGCAGAACGGAGTGGATGTATCTGTGACTTGTGTAGGGGACTAAGAGACGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTGCAGGGATGGAAAGATTTTCCAAAGGGTCTTAGGGTTCTTCTCCTTGAAGGAGACAGCAGTTCTGCTTCCGAGATAAGAGCAAAGCTTGAGGCCATGGACTACAATGATGGCTTACAAAGCTGCTATATGCTCATGAAAACTGAGAGTGGTCCAAATTCTAAAGTTTCTACCTTTTACAACGAGAATGAAGCTTTGTCTGCAATCTCAAGTAGTCCTGAAGGCTTCCATGTTGCCGTAGTGGAGGTGAGTACAAGCAATAGCCAGGGAGGTTTCAAATTCCTTGAGAATGCAAAGGACTTGCCAACCATTATGACTTCAAACAGTCAGTGCCTGAACACCATGATGAAGTGCATCGCGCTTGGCGCAGTTGAGTTCCTCACTAAGCCACTCTCCGAGGACAAGCTCAAAAATATTTGGCAGCATGTGGTTCATAAGGCATTCAACGCTGGGGCAAGTGCTCTGTCTGAATCACTAAAACCTGTCAAAGAATCTTTAGAGTCCATGTTGCAGCTCCAAACAGACAACGGACGACATGAAAGTACAATTTCAATAGATTTGGAGAACGTGTCCAGGTTTAGTGATAATGACCATGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTAAAACAAGGGGCAAGGTTACTGGATGTTGGGGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGACGGGGAATCTAAATCTGTCGAAACTTCATCTGAGAACAAATCTGCCGAAACTTCATGTGAGAACTTGAATGCTGAAAGTTCTCCTCAACCAAGGCAACCTGAGAATACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGTGAGAGTGCTGTTTCACTGAATCAACATAATAGAGAGTTTCTCAGCAAGGATGATGGTAATGCATCTCCAAATAAAACAGCCGTTCTTAATGATTCATGTGAGAACAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCGGAACTGCACAAAAAATTTGTGAAGGCAGTGGAACAAATAGGTATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGAAGGCTTGACAAGGCATAATGTGGCTAGCCATCTTCAGAAATATAGAATACACAAGAGACAAATCATGCCTGGGGGAGAAGATAGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGAAGCTATTGTCTACAAAGACCAATCATGGCCTACCCTCCATATCATTCGAATCACACCCTTCCTCCACCTCCTGTATATCCTATGTGGGGACCACCTGGCAGTCAAACAGCTGGTGTACAGATTTGGGGCCCTCATGGTTATCCCATGTGGCAGCCTGCAGAAAGTTGGCACTGGAAGCCTTATCCGGGGGCACACGTGGATGCATGGGGTTGTCCAGTGTTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACACTCAAAATATAGGTGGGCTGCACAATGCTAAAGCAGTAGATTACAGATTTGGTATGCCACAAAGTTCCTTTGAGCATTATCCGGCAGAAGAGGTGGTGGACAAGGTTGTGAAGGAGGCAATGAACAAGCCATGGCTACCCTTACCCTTAGGCCTCAAACCTCCTTCCATGGACAGTGTGTTGGATGAGCTCTCCAAACAAGGCATATCCAGCATCCCTTTTGGCAGCAACAAGGGCTCTAAACCTCGCTGA 1827 0.4521 MDLAERSGCICDLCRGLRDDAKPAMVCTANDLQGWKDFPKGLRVLLLEGDSSSASEIRAKLEAMDYNDGLQSCYMLMKTESGPNSKVSTFYNENEALSAISSSPEGFHVAVVEVSTSNSQGGFKFLENAKDLPTIMTSNSQCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAGASALSESLKPVKESLESMLQLQTDNGRHESTISIDLENVSRFSDNDHEQSAGSDKYPAPSTPQLKQGARLLDVGDCHEQTNCSTEKESGEHDGESKSVETSSENKSAETSCENLNAESSPQPRQPENTLIKEEEDFANGSKGESAVSLNQHNREFLSKDDGNASPNKTAVLNDSCENKANRKKMKVDWTPELHKKFVKAVEQIGIDQAIPSRILELMKVEGLTRHNVASHLQKYRIHKRQIMPGGEDRKWPNQRDPMQRSYCLQRPIMAYPPYHSNHTLPPPPVYPMWGPPGSQTAGVQIWGPHGYPMWQPAESWHWKPYPGAHVDAWGCPVLPPPQAPCFPYTQNIGGLHNAKAVDYRFGMPQSSFEHYPAEEVVDKVVKEAMNKPWLPLPLGLKPPSMDSVLDELSKQGISSIPFGSNKGSKPR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01955 608 MobiDBLite consensus disorder prediction 262 283 - -
Rops1g01955 608 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 362 421 IPR017930 -
Rops1g01955 608 ProSiteProfiles Response regulatory domain profile. 43 175 IPR001789 GO:0000160
Rops1g01955 608 NCBIfam myb-like DNA-binding domain, SHAQKYF class 365 420 IPR006447 GO:0003677
Rops1g01955 608 PANTHER TRANSCRIPTION ACTIVATOR GLK1 25 598 IPR044825 GO:0003700|GO:0045893
Rops1g01955 608 Pfam Myb-like DNA-binding domain 368 417 IPR001005 -
Rops1g01955 608 SUPERFAMILY Homeodomain-like 364 422 IPR009057 -
Rops1g01955 608 Gene3D - 42 186 - -
Rops1g01955 608 MobiDBLite consensus disorder prediction 284 307 - -
Rops1g01955 608 FunFam Two-component response regulator 361 424 - -
Rops1g01955 608 MobiDBLite consensus disorder prediction 262 307 - -
Rops1g01955 608 MobiDBLite consensus disorder prediction 219 245 - -
Rops1g01955 608 FunFam Two-component response regulator-like APRR2 41 185 - -
Rops1g01955 608 SUPERFAMILY CheY-like 83 177 IPR011006 -
Rops1g01955 608 Gene3D - 361 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01955 Rops-Chr1 39659216 39669586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01955 25 601 Response Regulator Gene Family AT4G18020 46.875 2.01e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops1g01955 Myb_DNA-binding 4.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01955 - - gmx:100784905 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01955 1 39659216 39669586 Rops2g04367 2 79557209 79563813 PCT