Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01945 ATGGGAGGGGCATCACTGCCTCCAGGTTTTCGTTTCCATCCAACTGATGAAGAACTGTTAGGATATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTGTACAAATTTGATCCGTGGGAGTTGCCGGAGAAATCTTTCTTACCAACAAGAGACTTGGAATGGTTTTTCTTGTGTCCACGGGATCGCAAGTACCCAAATGGATCACGGACAAATAGAGCCACCAAAGCTGGCTATTGGAAAGCCACCGGAAAAGACAGGAAGGTTGTGTGCCAATCTAGTCCATTCACTTCACCTGTGACAGTGACAGGGTACCGTAAGACCCTGGTTTTCTATCGTGGAAGGGCCCCCTTAGGAGATCGAACAGACTGGGTTATGCATGAATATCGCCTCTGTGATGATCCTAGCCAAGGCTCACAGGGTGCTTTTGCCTTGTGCCGAGTTATTAAAAAGAATGAGAAGACCAATGGTTCTCTGGGAGGACAGAAGGGTAAAAGCAAAGGTGGGAGCAATTCCATCAATGGGAATGACACCAACATGAGATTCTCCAATGAGCATTCCATTATCTCTGGTGACATTTCCTCTAAGGTAAGTCAACTCTGCAGTGAGAGTCGTTATTCAAGTCCTACTGATTCTCCATACAATGTGGCTCCAGTGGCTGGGTTTGAGCAAGCTTCCACTGACACCAATACTTCGAGCTTCTGGCTCTCCCCTGATATGATTCTTGATTCTTCAAAGGAGTACTCTCAAATACAAGATGTCGTTGGAAGCTTTCCACAGCATGACTTAACAAGTACAATGACACCATGGCAATCATTCGAACATACAGAAATTTCACCAAGTTCATCCCACTCAAATTTTAATGGGGAAATTGAATTTTCTGATGCTCTCAGTCAACTTGGTTGCATGTCACCTTACTCAGGACAAGGAAGCTTCATGAACTTCTATGTAAATGAGGATGTGCCTTATGAATGCTATGATCAAATTAATTCAATCAGGGACACAAAACAATTCTGA 1044 0.4377 MGGASLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPTRDLEWFFLCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSSPFTSPVTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDPSQGSQGAFALCRVIKKNEKTNGSLGGQKGKSKGGSNSINGNDTNMRFSNEHSIISGDISSKVSQLCSESRYSSPTDSPYNVAPVAGFEQASTDTNTSSFWLSPDMILDSSKEYSQIQDVVGSFPQHDLTSTMTPWQSFEHTEISPSSSHSNFNGEIEFSDALSQLGCMSPYSGQGSFMNFYVNEDVPYECYDQINSIRDTKQF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01945 347 FunFam Nac domain-containing protein 86 15 163 - -
Rops1g01945 347 MobiDBLite consensus disorder prediction 165 187 - -
Rops1g01945 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 238 - -
Rops1g01945 347 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Rops1g01945 347 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Rops1g01945 347 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Rops1g01945 347 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01945 Rops-Chr1 39513199 39515574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01945 1 301 NAC Transcription Factor Family AT4G17980 54.723 1.31e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops1g01945 NAM 7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01945 - - adu:107487585 513.072