Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01940 ATGGATTCTCGGGAACCGCCGAACATGATGGTGGGACCCAATTCCTTCCCCAACACCTTGATGGCCCCCGCCACCACCCCATTCAACAACAACAACCCTTCCGACGAGCCTCTCCACAACAGCAACGCCGCATTCTCCGGCAAGAAGAAGAGAGGCCGACCCAGGAAGTACTCGCCGGACGGTAGCATTGCTTTGGGGCTGGCTCCAACCCACGTCCCTTCTCCTTCTTCTTCTTCGTCCCCCAAGAAGCATAGGGGAAGACCCCCAGGCTCTGGAAAGAAGCAGCTCAATGCCCTTGGAACCGGTGGCATTGGTTTTACTCCCCATGTTATATTGGTTGATGCTGGCGAGGACATTGCTGCGAAAATTATGGCCTTTTGTCAGGAAGGACCTAGAACAGTTTGCATTCTTTCTGCTAATGGTGCAATCTCCAATGTCACCCTTCGACAGCCAGCAATGTCTGCGGCTACTGTCACTTATGAGGGCCAATTTGAGATTATATCTCTGTCAGGTTCTGTACTACTATCTGAAAATAACAGTGGTAGTAACAGAATGGGTGACTTGAGTATGTCTCTGGCAGGGTCTGATGGACGAGTTTTGGGAGGTGAAGTTGTTGGAATGCTTACTGCGGCATCCCCAGTACAGGTAATTGTGGGTAGCTTTATTGCGGATGGCAAAAAGTCTAGCTTGAATAACCTGAAATCTGGGTCTTCTTCAGCACCATCATCCCAAATGTTAACTTTCGGTGCTCCTGTGACTCCGGCCAGTCCTACCTCTCAAGGGCTTTCAACTGAGTCCTCTGATGACAATGATAATGGTCTTTTTAGTAAGGGGCCTGGATTCTGCAATAATCCTAATATGCAGATGTACCATCACCAACTTTGGGCTGGCCAAACTCAACAGTGA 906 0.4967 MDSREPPNMMVGPNSFPNTLMAPATTPFNNNNPSDEPLHNSNAAFSGKKKRGRPRKYSPDGSIALGLAPTHVPSPSSSSSPKKHRGRPPGSGKKQLNALGTGGIGFTPHVILVDAGEDIAAKIMAFCQEGPRTVCILSANGAISNVTLRQPAMSAATVTYEGQFEIISLSGSVLLSENNSGSNRMGDLSMSLAGSDGRVLGGEVVGMLTAASPVQVIVGSFIADGKKSSLNNLKSGSSSAPSSQMLTFGAPVTPASPTSQGLSTESSDDNDNGLFSKGPGFCNNPNMQMYHHQLWAGQTQQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01940 301 PRINTS AT-hook-like domain signature 48 58 IPR017956 GO:0003677
Rops1g01940 301 PRINTS AT-hook-like domain signature 80 91 IPR017956 GO:0003677
Rops1g01940 301 SMART AT_hook_2 48 60 IPR017956 GO:0003677
Rops1g01940 301 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Rops1g01940 301 MobiDBLite consensus disorder prediction 232 280 - -
Rops1g01940 301 MobiDBLite consensus disorder prediction 12 41 - -
Rops1g01940 301 CDD DUF296 107 221 IPR005175 -
Rops1g01940 301 ProSiteProfiles PPC domain profile profile. 102 243 IPR005175 -
Rops1g01940 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 223 - -
Rops1g01940 301 Gene3D - 108 235 - -
Rops1g01940 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 270 IPR039605 GO:0003680
Rops1g01940 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 221 IPR005175 -
Rops1g01940 301 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01940 Rops-Chr1 39469695 39473423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01940 28 300 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 48.387 7.80e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01940 - - pvu:PHAVU_002G006700g 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01940 1 39469695 39473423 Rops2g04386 2 79903456 79908734 PCT