Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01939 ATGGCTGGTTTCGATTTAGGCACAGCTTCACACTTTGTTCAAAATCTCCACAGACCAGAGTTCAACCTGCAACAGCAACAACAACCCGAATCCAAAGAGGAACCGAAGGAAGCTGACCCGTTTTCCACCGAAGATGGTCCCCACCAGGGTCTTGAGCTGGCCTCCTTCGCCGGACCTGGCGACGTGGATGGTCGGAGACCACGTGGCCGACCACCGGGATCGAAGAACAAAGCTAAACCTCCGGTGATCATAACAAGGGAAAGCGCAAACACGCTTCGTGCTCATATTCTTGAAGTTGGCAACGGCTGCGACGTGTTCGAAAGCGTCACAACCTACGCGCGGCGGAGACAGCGTGGGATCTGTATTCTGAGTGGGAGTGGGACAGTGACAAATGTGAGCTTGAGACAGCCGGCATCGGCGGGAGCAGTCGTGAACCTTCATGGAAGCTTCGAGATATTGTCACTGTCGGGGTCTTTTCTTCCTCCGCCGGCTCCGCCGGGAGCCACTAGCCTGAGCATATACCTTGCCGGAGGACAGGGACAAGTGGTGGGTGGGAGTGTTGTGGGAGAGTTGATCGCAGCTGGACCTGTGATTGTGATAGCTGCTTCGTTCACCAACGTGGCTTATGAACGGTTACCTTTGGATGAGGAAGAACAAGTTCAGATACAGCCACCGGCAGTTGGTGGTCAGGTAGGGAACAACCCATTTCCGGACCCATCGTCGGGACTTCCTTTCTTCAATTTGCCGCTGCAGAATGTTCAGTTACCAGTGGATAGGTGGGGGGGAAACTCAGCTGGACGTTCACAATTTTGA 813 0.5424 MAGFDLGTASHFVQNLHRPEFNLQQQQQPESKEEPKEADPFSTEDGPHQGLELASFAGPGDVDGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVGNGCDVFESVTTYARRRQRGICILSGSGTVTNVSLRQPASAGAVVNLHGSFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLDEEEQVQIQPPAVGGQVGNNPFPDPSSGLPFFNLPLQNVQLPVDRWGGNSAGRSQF* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01939 270 MobiDBLite consensus disorder prediction 15 29 - -
Rops1g01939 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
Rops1g01939 270 CDD DUF296 93 176 IPR005175 -
Rops1g01939 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 223 IPR014476 GO:0003680
Rops1g01939 270 MobiDBLite consensus disorder prediction 1 82 - -
Rops1g01939 270 ProSiteProfiles PPC domain profile profile. 89 226 IPR005175 -
Rops1g01939 270 FunFam AT-hook motif nuclear-localized protein 92 219 - -
Rops1g01939 270 Gene3D - 92 224 - -
Rops1g01939 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01939 Rops-Chr1 39445537 39446349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01939 1 270 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.646 2.18e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01939 - - jre:108994023 394.815