Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01938 ATGACCCAGATCCAAAAATCATCACAATCCCAACACCACAAAAATCAACCCCAACCAAACCCTAACTCCACCGCCTCATCAATTTGGATGTGGAACCCTAGGGAACCCCAAGAAGATGATGACTCATGGGAAGTCAGAGCCTTTGCAGAAGACACAAGGAACATCATGGACACCACTTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCTCTAGGTGGCCACATGAACGTGCACCGCCGTGACCGTGCTCGCCTCCACCAAGCTCATCCACCTGGTTCAGTCAACCACCACCCCACATCCTCATTCATAAATATCCCACCTCAGGAACTTGTTGCAAATGCTGGATTGTGCCTCCTCTACCATTTGCCAAGCCCTAATGCTCCAACTCCTAGTTCTTCTACCCTTAATGGAAATGCAAATGGAGAATCTCCCTCCACTCTCCTCTCTATCTCTTCCTATCCACCAAACAACTTGATGATGCAAACTTGCTTGCCATCCTTTAATTTGCCAATGCCTCAGGCAACTGGGATCACTAGTATTTCTTCTTCATATTGCTGCAACTCTACCAAAGTGGAACAACCCACAACCTCCACCTCCATACATAATGGCCACCTTGAAGAGCTTGATCTTGAACTCCGCCTGGGGAACAAGCCATCACCAACCTCAAGAAGCTAG 702 0.4858 MTQIQKSSQSQHHKNQPQPNPNSTASSIWMWNPREPQEDDDSWEVRAFAEDTRNIMDTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAHPPGSVNHHPTSSFINIPPQELVANAGLCLLYHLPSPNAPTPSSSTLNGNANGESPSTLLSISSYPPNNLMMQTCLPSFNLPMPQATGITSISSSYCCNSTKVEQPTTSTSIHNGHLEELDLELRLGNKPSPTSRS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01938 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Rops1g01938 233 MobiDBLite consensus disorder prediction 1 42 - -
Rops1g01938 233 MobiDBLite consensus disorder prediction 1 31 - -
Rops1g01938 233 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Rops1g01938 233 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Rops1g01938 233 SMART c2h2final6 65 87 IPR013087 -
Rops1g01938 233 Gene3D Classic Zinc Finger 56 106 - -
Rops1g01938 233 Pfam C2H2-type zinc finger 65 89 - -
Rops1g01938 233 PANTHER OS07G0101800 PROTEIN 37 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01938 Rops-Chr1 39400679 39401380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01938 29 97 C2H2 Transcription Factor Family AT4G17810 73.333 2.54e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g01938 zf-C2H2_6 4.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01938 - - gmx:100818142 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01938 1 39400679 39401380 Rops1g01938 1 39400679 39401380 ECH
Rops1g01938 1 39400679 39401380 Rops2g04388 2 79997847 79998437 PCT