Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01935 ATGTTGCTGGTTGGAGATGGTTCTAATGGTAAAGGAGTAGAGGCAAAGCTAGAGTGTGCGGTTGTAGATGTTAATCTTTCACTGTGGACCAGAAGTGCAACACCAGAAAATGATGCTGTTGGGATTGAAGACAGTGCTGAGGACCCATCAACATCACTCTCTCTTGCACAACCTTCAACTACTTGTCTGCGTGTGGAAGACATTGATGGCGGATTACTCCGGCGACACATTGGTGTTGGTGAACACTTTGCCATGCTTCCCTGCAGTGAATCCACTTGTGCTGTTAAGATGGCTTTGACACTAGAATTTGGAGAAGCCGCTGCATGCTCTGGTTTGTCCAATTTTGATAATTTTAGATTCTCAAATTGGCTTGAGAAGCTTAAAGAATTAGAAATCACAAGTGATAACATCTCATTTGTGAGAAGATTACATGATAGAAATGTTACAATAAGTAACCATGATAGTGGTCCTTATAGGAAGAATAAATCTATCAATTCGGCTTCATATCATAGCTTTCTCGTGTATGAAAAGATTGTGAATGAGACTCATTTTGACAAAGCCAAGATAGTTCAATCAAACAGATCAGATCTACCAGATACTTCTTCATTGAAAGATTTCTATGATTGTGTTATCTCGGCGAAGGGAAAACCTTTTGAGTGCTTAAATGAACAAGTGGAGTCTTCACTAGCAAGAACATCAATACCTGGGTTAGGTAGTCAGATAGATGGTATTTATAGCTATGCTACATTTGGGAGAGCTGATGCTCATTTGAGTTGTTTTGAAATCGGAAGTCATCATCCATACCACGAGAATCATCTCCAGGGCTCCGTTGTTGTGATTGAGAACAATATGCAAGAATCTTGGCAATCTCAGCCAAGAAACCCTAGCGATGTTTCCGACTTAATGGACGATTGGGTTAGAGTTTGTGATACCTGTGGGGATGTAGGGAAGGAGGACTCAATTGCTCTTTGTAACAAGTGTACCGATGGTGCACAGCACATTTATTGTATGCGTGTAATGCTGAAAGAAGTTCCTAAAGGTGATTGGACGTGCGAAGACTGCACGCTAAGGGCAGGAACTCACAAATTAATGCAATATAAAGTTGAAGAGGCTGCCAGAAGAAAAGGACGTCTACAATCTAGTAAAGGTTCAAAATTAAAATTTAGATCTTCATATGCTAGGAAAAGTGGGGAAAATGGTGTAAGTTCTACATCTAGTTTATCAGCTAAGAGACATGGAGTCCCTTTAGAAGCTCAGTCAGAGAAAAAAGCCAGGGCTATTGAGAGCCAGCTAGCCGAACACCCCACAAAAGCTGCTACTGCTATGAGCCTAAATAAATTATGCACTGGTCCTGCTTCTGATGAAAGGTCCCACTTGAGAGGCTTGGCTCAGGTTGAGGCAGCAACTCTTTTACAGGGTGGTGTCATCCCAGAGTTTGATTATGCATGGCTAGGCAAATTTCAGATACACAGCAATGAGGGGACTACAAGGACTTGTGATGGGCTTCAAGCTCATTTATCAACTTGTGCTTCACCTAAAGTTCTTGAAGTGGTGTACAAGCTTCCTGAGATTATTATACTGGAGGAACTACCTCGCTTGAGGATGTGGCCATCTCAATTCATGGGAAGACAAGTCACTGAAGAAAATATTGGCCTCTACTTTTTCGCAAAGGATGTTGATAGCTATTATACATATTATAGAGGATTGATGAATTATATGATCAAGAATGATTTGGCTCTGAAAGGGAATTTGGATGGGGTTGAGCTTTTGATTTTTTCATCCAACATTCTGCCCGAGGAAATACAGCGTTGGAATCAAATGTTGTTCTTCTGGGGTGTATTCAAAGGACGGAAGGTGAATAACTCAGCAAACGCACCACCAGTCTCCAATTCTCTAAAGCCAGAAAATAGAGATACTGTGAAGATAAGGGCATTTGATCTCAATGCTTATCCTGAAGATGAAGATGAGGAGGCAGGAGTTGATGAAAGTCCTCAATTTGACAACATGGGTGGTACAGGTGACGGAATTTTGCTGGTTGGAGATAGCTCTAATGGTAAAGGAGGAGAGGCAAAGCCAGAGTGTGCGGTTGTAGATGTTAATCTTTCACTGCAGACTAGAAGTGCAACACCAGAAAATGGTGCTGTTGGGATTGAGGACACATCAACATCAGTCTCTCTTGCACAACCTTCAACTGCAATCCATCTTGACCAGCTTGATTGGCAACTTGCGGAAACTTTGATTATTCTCTCTAGGGACAGATTTTGA 2265 0.4163 MLLVGDGSNGKGVEAKLECAVVDVNLSLWTRSATPENDAVGIEDSAEDPSTSLSLAQPSTTCLRVEDIDGGLLRRHIGVGEHFAMLPCSESTCAVKMALTLEFGEAAACSGLSNFDNFRFSNWLEKLKELEITSDNISFVRRLHDRNVTISNHDSGPYRKNKSINSASYHSFLVYEKIVNETHFDKAKIVQSNRSDLPDTSSLKDFYDCVISAKGKPFECLNEQVESSLARTSIPGLGSQIDGIYSYATFGRADAHLSCFEIGSHHPYHENHLQGSVVVIENNMQESWQSQPRNPSDVSDLMDDWVRVCDTCGDVGKEDSIALCNKCTDGAQHIYCMRVMLKEVPKGDWTCEDCTLRAGTHKLMQYKVEEAARRKGRLQSSKGSKLKFRSSYARKSGENGVSSTSSLSAKRHGVPLEAQSEKKARAIESQLAEHPTKAATAMSLNKLCTGPASDERSHLRGLAQVEAATLLQGGVIPEFDYAWLGKFQIHSNEGTTRTCDGLQAHLSTCASPKVLEVVYKLPEIIILEELPRLRMWPSQFMGRQVTEENIGLYFFAKDVDSYYTYYRGLMNYMIKNDLALKGNLDGVELLIFSSNILPEEIQRWNQMLFFWGVFKGRKVNNSANAPPVSNSLKPENRDTVKIRAFDLNAYPEDEDEEAGVDESPQFDNMGGTGDGILLVGDSSNGKGGEAKPECAVVDVNLSLQTRSATPENGAVGIEDTSTSVSLAQPSTAIHLDQLDWQLAETLIILSRDRF* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01935 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 369 IPR013083 -
Rops1g01935 754 PANTHER - 306 410 - -
Rops1g01935 754 MobiDBLite consensus disorder prediction 395 410 - -
Rops1g01935 754 MobiDBLite consensus disorder prediction 373 424 - -
Rops1g01935 754 SUPERFAMILY FYVE/PHD zinc finger 296 361 IPR011011 -
Rops1g01935 754 SMART PHD_3 308 355 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01935 Rops-Chr1 39351168 39362512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01935 308 377 C2H2 Transcription Factor Family AT3G01460 38.889 2.52e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01935 - - ccaj:109801058 344.354