Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01928 ATGGCAGTGACAACAGTTATGGAGAAATTAAACACACCAACAGAGTCATCACCAACCAGCTGGTTATCTGATTTGCTGTTTCAGGAAATGGATGATTGCAATTTGTTTCAACAATGCTACCCGAACTTGCTTGATGATGAAGAGTTTCTTTTTCATGACATAGCTTGTGTCCTGCAAGGGGAGAACTTGCAGCAACCTTTGTCTTCTGAGAGTTACTCTTCTGATCCTGCTTCTAATTCAGAAACTCTCAGGAATTCATCTTTTGAGAGACCTACCAAGCAGCAGAAAACGAAACACTTTATACCAGATCTTTCTCCCTTTTCCTCCCCTTCTTCTCCCACCTCACAGATTTTGTCATTTGAGAACTCAAACTCATCCCCTGCCAACAACACCACCCACTTTTATGGTACCTTAAACACTAAACAGAACGAGGTTGTTCCTGTGTCACCACCCCAGGTGCAAAATGTGAATTTAACGGCTCAAAACGGAAAAGGGTCATCGAAAAACCAAACCTTTGAAACTGTAATCCCCCAAGGCCAAGGGACTAAGAGGTCTCCCGTTCACACTCAGGACCATGTCTTGGCCGAGAGAAAGCGAAGAGAGAAACTCAGCCAAAGCTTAATTGCTCTTGCAGCTCTTCTTCCAGGCTTAAAGAAGATGGACAAGGCTTCAGTCCTTGCAGACGCTATCAAGTATGTGAAAGAGCTCCAAGAGCGTTTGAGGTTACTTGAAGAACAAAACAATAATAGAGCGGAAGAGTCTGTGGTGTTGATCAACAAACCACAGCTCAGCTGCGAAGAGCATTCGTCCTCAAGTGGTGATGGCTTTGAGAATGTTAATGGTAGTGAAGCACTCCCTCATGTGGATGCAAGAGTGTCAAACAAGGACGTGCTTCTTCGTATTCACTGCCAGAAACAAAAGGGTATTTTGCTAAAGATACTAGTCGAGGTTCAAAACCTCCATCTCCTCGTGGTCAATAGCAGTGCCCTACCTTTTGGGGATTCTATCCTTGACATTACCATTGTTGCACAGATGGGCACAGGCTACAACTTGACCAAAAACGACCTTGTAAAAAACTTACGCGTGGCTACATTAAGATCCATGTCATGA 1110 0.4396 MAVTTVMEKLNTPTESSPTSWLSDLLFQEMDDCNLFQQCYPNLLDDEEFLFHDIACVLQGENLQQPLSSESYSSDPASNSETLRNSSFERPTKQQKTKHFIPDLSPFSSPSSPTSQILSFENSNSSPANNTTHFYGTLNTKQNEVVPVSPPQVQNVNLTAQNGKGSSKNQTFETVIPQGQGTKRSPVHTQDHVLAERKRREKLSQSLIALAALLPGLKKMDKASVLADAIKYVKELQERLRLLEEQNNNRAEESVVLINKPQLSCEEHSSSSGDGFENVNGSEALPHVDARVSNKDVLLRIHCQKQKGILLKILVEVQNLHLLVVNSSALPFGDSILDITIVAQMGTGYNLTKNDLVKNLRVATLRSMS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01928 369 Gene3D - 175 253 IPR036638 GO:0046983
Rops1g01928 369 MobiDBLite consensus disorder prediction 98 132 - -
Rops1g01928 369 SMART finulus 193 242 IPR011598 GO:0046983
Rops1g01928 369 Coils Coil 226 253 - -
Rops1g01928 369 MobiDBLite consensus disorder prediction 67 90 - -
Rops1g01928 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Rops1g01928 369 MobiDBLite consensus disorder prediction 67 132 - -
Rops1g01928 369 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
Rops1g01928 369 CDD bHLH_AtNAI1_like 187 260 - -
Rops1g01928 369 PANTHER BHLH TRANSCRIPTION FACTOR 63 365 - -
Rops1g01928 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01928 Rops-Chr1 39300129 39302236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01928 97 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.223 9.80e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01928 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01928 - - gmx:100816551 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01928 1 39300129 39302236 Rops2g04390 2 80080180 80082100 PCT