Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01927 ATGATATCACCAGACGAATCATGGACAAGTTTGTTGTGTGATTTGGAACCAGAGGATTACAATTTCATCAATCAATCCAACACAAACGGGTTTGATGGAAGTTTCCCATCTCATCATGATGCAGCCTCTGCACCACAAGAGCAGAACCTGCAACGATCTTTCTCTTCAGATAGCTACCATTCTCACGCCACCTCCACCTTCAAAGGGGAAAACTCCAGCAGCACCATGAGCAACTCCTCAGGGGAAGATATCAGCTTTGAGAGGCCTTCCAAGACACTCAAGACTGGTACTTTTAACTCTACAAACACCAACTACCTCCCTCAAAAAAAGGATTCTTCTCTTTCCTACATTCTTTCGTTTAACAATGTGAATCCAGCACTAGTATTGAACATTGATTCAACCTTGAAGCCTAAAGGCAAGGTTGTGAATCATGGAAGGTCTTTGCCCTCAAAGGGGTCCTTGCAAAATCAAAAGAAGGAACCTAAACTCAATATGCAGGAGGGTGAGAAGACTGCCAGATCTCCTAAACATGCTCAAGATCACATAATTGCTGAGAGAAAGAGGAGAGAAAAGATTAGTCAGCAGTTGATAGCTCTTTCAGCCCTTATTCCAGGCCTTAAAAAGATGGATAAGGCCTCTGTTCTGGGGGACGCTATAAAGCACGTGAAACAGCTCCAAGAACAAGTGAAGCTACTGGAAGAGCAAACCAAAAGGAAAAGCGTTGAATCTGTGGTATATGTTGAGAAATCCAAGTCCTCTGCAGGGGAAGATGTTTCAGACACCTCGTCAAATTCTGGCAATGGAAACTCCAATGAACCATCAAAAACAAATCAACCACAACCAGAAGTTGAAGCAAGGGTGTCAGATAAGAACGTGCTGATCCGAATCCACTGTGAGAAACAGAAGGGAGTGTTGATGAACATACTCAAAGAGATAGAGAATCTTCATCTATCAGTGACCAGTAGTAGTTTCTTGCTTTTCGGGACCTCCAAATTGGAAATAACCATCATAGCCGAGATGGATGATGAGTTCAGCCTCAGTGTGAAGGAGCTAGTTAGAAACCTTCGTGTAGGAATCTTGCAGTTCATGTAG 1092 0.4313 MISPDESWTSLLCDLEPEDYNFINQSNTNGFDGSFPSHHDAASAPQEQNLQRSFSSDSYHSHATSTFKGENSSSTMSNSSGEDISFERPSKTLKTGTFNSTNTNYLPQKKDSSLSYILSFNNVNPALVLNIDSTLKPKGKVVNHGRSLPSKGSLQNQKKEPKLNMQEGEKTARSPKHAQDHIIAERKRREKISQQLIALSALIPGLKKMDKASVLGDAIKHVKQLQEQVKLLEEQTKRKSVESVVYVEKSKSSAGEDVSDTSSNSGNGNSNEPSKTNQPQPEVEARVSDKNVLIRIHCEKQKGVLMNILKEIENLHLSVTSSSFLLFGTSKLEITIIAEMDDEFSLSVKELVRNLRVGILQFM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01927 363 Gene3D - 174 246 IPR036638 GO:0046983
Rops1g01927 363 MobiDBLite consensus disorder prediction 252 284 - -
Rops1g01927 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 242 IPR036638 GO:0046983
Rops1g01927 363 SMART finulus 182 231 IPR011598 GO:0046983
Rops1g01927 363 MobiDBLite consensus disorder prediction 256 284 - -
Rops1g01927 363 Coils Coil 215 242 - -
Rops1g01927 363 MobiDBLite consensus disorder prediction 41 105 - -
Rops1g01927 363 MobiDBLite consensus disorder prediction 141 180 - -
Rops1g01927 363 Pfam Helix-loop-helix DNA-binding domain 180 226 IPR011598 GO:0046983
Rops1g01927 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Rops1g01927 363 MobiDBLite consensus disorder prediction 24 105 - -
Rops1g01927 363 PANTHER BHLH TRANSCRIPTION FACTOR 45 361 - -
Rops1g01927 363 CDD bHLH_AtNAI1_like 177 250 - -
Rops1g01927 363 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01927 Rops-Chr1 39296621 39298322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01927 71 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.391 3.12e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01927 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01927 - - gmx:100816024 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01927 1 39296621 39298322 Rops1g01927 1 39296621 39298322 ECH
Rops1g01927 1 39296621 39298322 Rops2g04391 2 80165190 80167040 PCT