Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01926 ATGATGGAAATTGCATCCCCCAACTATTTGCCTGAACTTGGAATGGAGGATCTCACCTTCTTTCACCAATACCCAATGGATTCTTTTGCATGCCCACTTGATGACTTTGACTTCCAGTGTTTCTCTGTGTCCCCAAAGAGCAATATTAATTCCTCTTATCAGTGTTTCAACTACGAAAGTCTTGATCAGTCTGTGGCTTCAGCAAGACCAACTATGACATTCAGTACCTTGAACACTTGTGCCAGTGACTTGATTCCCCCCAAGCCTTCTTCCTCTCCATCCTCCAAACTCATATCTTTCCAGAACTTTAGTGCACCCTCAGTTGCTTCCCAGCAATGTTACGATATTAAGCCTAAAATCGAGCACGGGAGTAGTGAGAACATGGGTTTCGCAGCTTTCATTTCTCAAGATTCATATGAGGAGAACATTTTCTCAAATTGTGATTATCAAGGGAACCGGGTCGCCAGGAACCCAACCCAAGCTCAAGAACACGTAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCAGGAGCTTCATTGCTCTTTCAGCCATCCTTCCTGGCCTCAAAAAGATGGATAAGGCTTCTGTCTTGGGAGATGCTATCAAGTATGTGAAACAATTACAGGACCGCGTGCAGAATCTGGAGGAGCAAGCATCTACGAAAAAAGTAAAGAAGTCTATTCTCTTCACCGATGATGATGGCTCAACATCCGATGAAAATTCCGATAGCCAATGCGACCAGCCAATCCCCGAAATCGAAGTAAGAGTTTCCGGTAAAGACGTGCTTATCAAGATTCAATGCGACAAAAACAATGAGCGTGCGGCCATGATACTCAGCGAATTAGAAAAGCATCATCTCACTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGGAATAACACTATTGATGTAACCATTGTTGCTCAGATGAACAAGGAAAACTTTATGACAGCAAAGGATCTCCTAGAAAGTCTAAGGCAGGCTTTGAGGCGGTTCATTTGA 1002 0.4381 MMEIASPNYLPELGMEDLTFFHQYPMDSFACPLDDFDFQCFSVSPKSNINSSYQCFNYESLDQSVASARPTMTFSTLNTCASDLIPPKPSSSPSSKLISFQNFSAPSVASQQCYDIKPKIEHGSSENMGFAAFISQDSYEENIFSNCDYQGNRVARNPTQAQEHVIAERKRREKLSRSFIALSAILPGLKKMDKASVLGDAIKYVKQLQDRVQNLEEQASTKKVKKSILFTDDDGSTSDENSDSQCDQPIPEIEVRVSGKDVLIKIQCDKNNERAAMILSELEKHHLTVQSSSFLPFGNNTIDVTIVAQMNKENFMTAKDLLESLRQALRRFI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01926 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Rops1g01926 333 Gene3D - 151 224 IPR036638 GO:0046983
Rops1g01926 333 Coils Coil 198 225 - -
Rops1g01926 333 PANTHER BHLH TRANSCRIPTION FACTOR 25 330 - -
Rops1g01926 333 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Rops1g01926 333 CDD bHLH_AtNAI1_like 161 229 - -
Rops1g01926 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 224 IPR036638 GO:0046983
Rops1g01926 333 SMART finulus 165 214 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01926 Rops-Chr1 39266184 39267716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01926 2 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.390 2.75e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01926 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01926 - - gmx:100791810 408.683