Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01925 ATGCGTCCCTTCCTTTTGCTTTTGCTTTTCCTCTTCTTCCATTTACATTCCCACAAAGCTTTCTCTGCACCCATCTCAGAGTACCGTGCTCTTCTATCTCTCCGTGAAGCCATTATCGACACCACCCCACCTGTTCTCTCTTCATGGAAAGCTTCAACCGCTTACTGTTCCTGGTCTGGTGTCACGTGCGACGCACGCCGACATGTCATCTCTCTAAACCTCACTGGACTCGGCCTCTCCGGCACACTCTCCGGCGACATATCTCACCTCCCATTTCTCCTCAACCTCTCCCTCGCCGACAACAAGTTATCCGGCCCCATCCCTCCGTCGTTATCCAACATCTCCGGCCTTCGGTTCCTCAACCTCTCTAACAATATCTTCAATGAAACCTTCCCTTCTGAGCTTTCCCAGTTACAGAACCTCGAAGCTCTTGACCTTTACAATAACAACATGACCGGAGTGCTCCCTTTAGCTGTTACTCAGATGTCGAATCTCCGGCACTTGCATCTCGGAGGAAACTTCTTCTCCGGCCAGATCCCGCCGGAGTACGGACAGTGTCGAAACCTGGAGTACCTGGCAGTTTCTGGCAACGAGCTCGACGGAGCCATTCCGCCGGAGATCGGAAACTTGAGCAATCTCCGGGAACTTTACATTGGATACTACAATGCCTACGTTGGTGGCATTCCGCCGGAGATTGGGAACTTGACAGAATTAGTAAGGCTCGATGCTGCTTATTGTGGATTATCCGGTGAGATTCCGGCGGTGTTGGGGAAGCTTCAGAGACTGGACACTCTGTTTCTTCAAGTGAATGCACTTTCTGGGTCTCTCACATGGGAGCTTGGAAACTTGAAGAGTTTGAAGTCCATGGATTTATCTAACAACATGCTGACGGGGGAGATTCCGGTGAGTTTCAGTGAGCTGAAGAACCTTACGCTTCTGAACCTTTTTAGGAACAAGCTTCACGGTGCTATTCCGGTGTTTATTGGAGAGTTGCCGGCGTTGGAGGTAGTGCAGTTGTGGGAAAACAACTTCACAGGGAACATTCCAGAAGGTTTGGGGAAGAACGGGAAGCTCACTTTTCTTGATCTTTCTTCAAACAAGTTAACTGGGACACTTCCTCCTTACCTTTGTTCTGGGAATCGTCTTCAGACTTTGATAACTCTTGGGAATTTCCTTTTTGGTCCTATCCCTGAATCATTTGGTAGCTGCCAATCATTGAACAGGATTCGTATGGGAGATAACTTCCTCAATGGTTCAATTCCTAAAGGTCTTTTTGGGCTTCCAAAACTCACCCAGGTTGAGCTTCAGGGCAATTATCTCTCTGGCCATTTTCCTGAGACTGATTCTGTCTCTGTTAATCTTGGTCAGATTACTCTCTCAAACAACAAACTTTCTGGGCCATTGCCTCCTTCTATTGGTAACTTCTCCAGCATGCAGAAGCTTCTTCTTGATGGCAATTTGTTTTCTGGTCGGATCCCACCTCAGATTGGGAGGTTACAACAGCTTTCAAAGATTGATTTTAGCCACAACAAGCTCTCAGGTCCTATTGCTCCCGAGATTAGTCAATGCAAGCTCTTAACTTTTGTTGATCTTAGCCATAATGAGCTCTCTGGTGAGATCCCAAATGAGATTACCGGTATGAGGATTTTGAATTACTTGAATCTTTCGAGAAATCATCTAGTTGGTAGTATTCCCACGTCAATATCCTCAATGCAAAGCTTAACTTCTGTTGATTTTTCATATAACAATCTATCTGGTTTGGTTCCTGGTACTGGCCAATTTAGCTACTTTAACTACACGTCTTTCTTGGGTAACCCTGATCTCTGTGGCCCTTATTTGGGTGCTTGCAAAGATGGGATTGCCAATGGTGCTCACCAATCTCATGTTAAAGGACGGCTCTCTTCTTCTTTGAAGCTCCTTTTGGTTATTGGGTTGCTTGCATGTTCTATTGTATTTGCTGTTGCAGCAATATTCAAGGCTAGGTCTATGAAGAAGGCCAGTGAGGCTCGTGCATGGAAATTGACTGCATTCCAACGTTTGGACTTCACTGTTGATGATGTTTTGGATAGCTTGAAGGAGGATAACATTATAGGGAAAGGAGGTGCTGGCATTGTCTACAAAGGTGCAATGCCAAATGGAGAACAAGTTGCTGTGAAGAGGCTTCCAGCTATGAGTAGAGCTCCAGAGTATGCCTATACATTGAAAGTTGATGAGAAAAGTGATGTGTACAGCTTTGGTGTGGTTCTTTTAGAGCTTATAACAGGTAGGAAACCAGTTGGAGAATTTGGTGATGGTGTGGACATTGTGCAATGGGTCAGGAAAATGACAGACTCAAATAAGGAAGGAGTTCTAAAAGTTCTTGATCCTAGACTTTCCTCAGTTCCCCTTCATGAGGTGATGCATGTTTTCTATGTAGCCGTGCTGTGTGTTGAAGAACAGGCAGTAGAAAGACCAACAATGCGTGAAGTTGTTCAAATGTTGACAGAGCTTCCAAAGCCACCTGGCTCTAAACAAGGGGACGTAACAATTACAGAGTCCTCTTTGTCATCATCAAATGCTTTAGAATCTCCAACCACAGCCTCAAAAGATCATCAACATTCTCCTCAATCCCCACCACCAGATCTTCTTAGCATTTGA 2637 0.4551 MRPFLLLLLFLFFHLHSHKAFSAPISEYRALLSLREAIIDTTPPVLSSWKASTAYCSWSGVTCDARRHVISLNLTGLGLSGTLSGDISHLPFLLNLSLADNKLSGPIPPSLSNISGLRFLNLSNNIFNETFPSELSQLQNLEALDLYNNNMTGVLPLAVTQMSNLRHLHLGGNFFSGQIPPEYGQCRNLEYLAVSGNELDGAIPPEIGNLSNLRELYIGYYNAYVGGIPPEIGNLTELVRLDAAYCGLSGEIPAVLGKLQRLDTLFLQVNALSGSLTWELGNLKSLKSMDLSNNMLTGEIPVSFSELKNLTLLNLFRNKLHGAIPVFIGELPALEVVQLWENNFTGNIPEGLGKNGKLTFLDLSSNKLTGTLPPYLCSGNRLQTLITLGNFLFGPIPESFGSCQSLNRIRMGDNFLNGSIPKGLFGLPKLTQVELQGNYLSGHFPETDSVSVNLGQITLSNNKLSGPLPPSIGNFSSMQKLLLDGNLFSGRIPPQIGRLQQLSKIDFSHNKLSGPIAPEISQCKLLTFVDLSHNELSGEIPNEITGMRILNYLNLSRNHLVGSIPTSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGIANGAHQSHVKGRLSSSLKLLLVIGLLACSIVFAVAAIFKARSMKKASEARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVYKGAMPNGEQVAVKRLPAMSRAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLSSVPLHEVMHVFYVAVLCVEEQAVERPTMREVVQMLTELPKPPGSKQGDVTITESSLSSSNALESPTTASKDHQHSPQSPPPDLLSI* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01925 878 Pfam Protein tyrosine and serine/threonine kinase 721 827 IPR001245 GO:0004672|GO:0006468
Rops1g01925 878 Gene3D Ribonuclease Inhibitor 25 178 IPR032675 -
Rops1g01925 878 MobiDBLite consensus disorder prediction 828 878 - -
Rops1g01925 878 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Rops1g01925 878 SUPERFAMILY RNI-like 71 393 - -
Rops1g01925 878 Gene3D Ribonuclease Inhibitor 346 619 IPR032675 -
Rops1g01925 878 MobiDBLite consensus disorder prediction 839 878 - -
Rops1g01925 878 Gene3D Transferase(Phosphotransferase) domain 1 710 844 - -
Rops1g01925 878 PRINTS Leucine-rich repeat signature 499 512 - -
Rops1g01925 878 PRINTS Leucine-rich repeat signature 358 371 - -
Rops1g01925 878 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Rops1g01925 878 Pfam Leucine rich repeat 116 173 IPR001611 GO:0005515
Rops1g01925 878 SMART LRR_typ_2 331 355 IPR003591 -
Rops1g01925 878 SMART LRR_typ_2 356 379 IPR003591 -
Rops1g01925 878 SMART LRR_typ_2 571 594 IPR003591 -
Rops1g01925 878 SMART LRR_typ_2 283 307 IPR003591 -
Rops1g01925 878 SMART LRR_typ_2 162 186 IPR003591 -
Rops1g01925 878 SMART LRR_typ_2 138 161 IPR003591 -
Rops1g01925 878 SMART LRR_typ_2 499 523 IPR003591 -
Rops1g01925 878 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 335 620 - -
Rops1g01925 878 SUPERFAMILY Protein kinase-like (PK-like) 683 721 IPR011009 -
Rops1g01925 878 SUPERFAMILY Protein kinase-like (PK-like) 726 837 IPR011009 -
Rops1g01925 878 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 727 828 - -
Rops1g01925 878 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 84 327 - -
Rops1g01925 878 SUPERFAMILY L domain-like 355 613 - -
Rops1g01925 878 Gene3D Ribonuclease Inhibitor 179 345 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01925 Rops-Chr1 39206625 39210562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01925 727 857 Receptor kinase-like Gene Family AT5G65700 80.451 5.05e-60 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops1g01925 PK_Tyr_Ser-Thr 8.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01925 - - lja:Lj2g3v1984370.1 1228