Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01922 ATGCCGCAACTCATTTTCAACCCCTTGCTCTTTCTACTACTAATATGTTTAGTGTGCTCCAATGGAAGTGGTTTGTCCCTTCCAAGGGACTTTCAAATTCTGCTGCAGGTCAAGAACACCCAGCTTGAAGATAAAAACAAGAGTCTTAAAAACTGGGTGCCAAATAAGGAACACAACCCGTGTAACTGGACCGGCATTACCTGCGATGCACGAAACAAATCAGTTGTCTCAATTGACCTCTCCGAGACTGGAATTTACGGTGACTTCCCCTCTGGTTTTTGTCGTATTCGGACCCTTCAAAACCTTTCTCTTGCAGTGAACTTTCTTGGTAATTTTATCTCCTCAATTTCTATGCTTCCATGTTCACGGCTTCGCTTATTGAACCTCTCAGACAATTGCTTCGTGGGAGGGTTGCCGGAGTTCACACCGGAGTTTACTGAACTAACACAACTGGACCTCTCACAGAACAACTTTTCCGGTGATATTCCGGCGAGTTATGGCCAACTTCCACAACTAAGGGTGCTCATTTTGTCTGGAAATCTTCTCAGTGGAACGATCCCTCCCTTTTTAGGTAACCTCAGTGAGTTAACTCAATTGGCACTAGCTTACAATCCTCTAAAACCAGGAACTTTACCTTCCCAGATAGGAAACCTTTCAAAGCTGGAAATTCTGTTCCTAGCCAAAGTTAACCTCATAGGGAAGATACCGCACTCCATTGGGAACCTTGTTTCGCTTAAGAACTTGGATTTGTCTCATAACTCATTGTCAGGTAAGATCCCAGATAGCATTTCGGGCTTGAAAAGTGTGAAGCAAATTGAGCTATTCGAAAACCAGCTTTCTGGTGAATTGCCCCAAGGTTTAGGAAACCTCAGCAATTTGGTTATATTGGACATATCTCAGAATGGTCTCACCGGAAAATTGCCAGATACGGTTGCTTCATTGCATCTTTATGCTCTCAACTTGAACGACAACCTTCTCAGTGGAGAAGTTCCAGATAGTTTAGCTTCAAACCCAAATTTGCAGGAACTGAAACTCTTCAACAACAGCTTCACAGGGAAACTGCCACAAGATCTTGGGAGAAACTCTGCGTTATATGACTTTGATGTCTCAACCAATGATTTCATCGGGGGGTTACCAAAGTACCTCTGCCAAAGGAACAGTCTTCATCGTCTTGTCACATTCACAAATCGCTTCTCTGGAAATCTACCTGATCAGTATGGTGAGTGCCATTCTCTCGAATATGTTAGAATCGAGGACAACCAACTCTCTGGCCAGGTGCCACCGAGATTCTGGAACCTTCCACGGCTTCAGTTTCTGAAAATGGAAAACAACAGGTTCGAAGGTCCCCTTTCTGTTTCCATCTCTGGTGCCAGGGGAGTCACCAAACTCCTTTTATCCAATAACAGCTTCTCTGGTAAGTTCCCAAAGGGAATCTGTGAACTTGATCTGCTTGTGGAGATTGATGTCAGCAAGAACCGGTTCACTGGTGAAGTTCCCACTTGCATAACTAGATTGAGGAAGTTACAGAAGCTTAGGATGCAGGAAAACATGTTCACCGGTGTGATTCCTAGTGATGTAACCTCCTGGACTGAGTTGACCGAGTTAAACTTGTCGCATAACCGATTCTCAGGTTCAATTCCACCGAAACTCGGTGATTTGCCAGACTTAATATACCTTGACCTTGCAGGTAATTCGTTGACGGGGAAGATTCCGGTGGAGTTGACGAATCTAACTCTCAACCAGTTTAATGTCTCTGACAATGAACTTTATGGTGAGGTGCCTTCAGGTTTCAACCATGAAGTGTACTTGTCTGGTCTAATGGGAAACCCGGGTCTGTGTAGCCCAGTTATGAAAACCTTGCGTCCTTGTTCAAGACACAGAACCTTTTCTCTGCTTGCTACAATCCTTTTATCTGCTTGTGTTGTGCTCCTTCTGGGGTCTCTGTTGTGGTTCCTGAAGAGCAAGTCACATGCTTTTGTAGGAAAATCCAAGGGATCCTTTATAACAACAACGTTTCAAAGAGTGGGGTTCAATGAAGAAGACATAATCCCATTCTTAACTAATGAGAATGTGATTGGCAGGGGGGGTTCGGGTCAGGTGTACAGGGTGAAGCTCAAGACGGGGCAGACAGTGGCAGTGAAAAAGCTTTGGGGTGGTACACAAAAATTAGATACGGAATTGGTGTTCAAATCGGAGATTGAGACATTGGGTAGAAGAATTAGGCATGCTAATATTGTGAAACTGTTATTTTGTTGCAGTGCTGATGACTTCAGAATATTGGTGTATGAGTACATGGAGAATGGTAGCTTAGGTGATGTATTGCATGTGGACAAGTGTGTGGAGTTAATGGATTGGTCCAGGAGGTTCAAAATTGCTGTGGGTGCAGCTCAGGGGTTGGCTTATTTACACCATGATTGTGTGCCTGCTATTGTTCACAGGGATGTGAAGAGTAATAACATACTGCTGGACCATGAATTTATGCCTCGTGTGGCAGATTTTGGGCTGGCTAAGACATTGCAGCGTGAGCCTGGCGAGGGTGCTATGTCCAGGGTTGCTGGATCATACGGTTACATTGCTCCAGAGTATGCTTATACACTGAAAGTGACTGAGAAGAGCGATGTCTATAGTTTTGGTGTGGTGTTGATGGAATTGATCACTGGCAAGAGGCCAAATGATTCTTCCTTTGGTGAGAACAAAGATATAGTGAAGTGGGTCACTGAGACTGCTTTATCACCATCTCCTGAAGGAGGGAGTGGCAATATTGGAGGAGGTTCCAATTGTATTATGACCCAGATTGTGGATCCAAGATTGAACCCAGCCACTTGTGATTATGAAGAGGTTGAGAAGGTTTTAAATGTGGCTTTACTTTGCACCTCAGCGTTTCCCATTACTAGACCATCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGGCTCGTCCCAAGTCTTGA 2958 0.4429 MPQLIFNPLLFLLLICLVCSNGSGLSLPRDFQILLQVKNTQLEDKNKSLKNWVPNKEHNPCNWTGITCDARNKSVVSIDLSETGIYGDFPSGFCRIRTLQNLSLAVNFLGNFISSISMLPCSRLRLLNLSDNCFVGGLPEFTPEFTELTQLDLSQNNFSGDIPASYGQLPQLRVLILSGNLLSGTIPPFLGNLSELTQLALAYNPLKPGTLPSQIGNLSKLEILFLAKVNLIGKIPHSIGNLVSLKNLDLSHNSLSGKIPDSISGLKSVKQIELFENQLSGELPQGLGNLSNLVILDISQNGLTGKLPDTVASLHLYALNLNDNLLSGEVPDSLASNPNLQELKLFNNSFTGKLPQDLGRNSALYDFDVSTNDFIGGLPKYLCQRNSLHRLVTFTNRFSGNLPDQYGECHSLEYVRIEDNQLSGQVPPRFWNLPRLQFLKMENNRFEGPLSVSISGARGVTKLLLSNNSFSGKFPKGICELDLLVEIDVSKNRFTGEVPTCITRLRKLQKLRMQENMFTGVIPSDVTSWTELTELNLSHNRFSGSIPPKLGDLPDLIYLDLAGNSLTGKIPVELTNLTLNQFNVSDNELYGEVPSGFNHEVYLSGLMGNPGLCSPVMKTLRPCSRHRTFSLLATILLSACVVLLLGSLLWFLKSKSHAFVGKSKGSFITTTFQRVGFNEEDIIPFLTNENVIGRGGSGQVYRVKLKTGQTVAVKKLWGGTQKLDTELVFKSEIETLGRRIRHANIVKLLFCCSADDFRILVYEYMENGSLGDVLHVDKCVELMDWSRRFKIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHEFMPRVADFGLAKTLQREPGEGAMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDSSFGENKDIVKWVTETALSPSPEGGSGNIGGGSNCIMTQIVDPRLNPATCDYEEVEKVLNVALLCTSAFPITRPSMRRVVELLKDHKLARPKS* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01922 985 FunFam Receptor-like protein kinase HSL1 316 621 - -
Rops1g01922 985 SUPERFAMILY RNI-like 74 374 - -
Rops1g01922 985 FunFam Leucine-rich receptor-like protein kinase family protein 211 309 - -
Rops1g01922 985 PRINTS Leucine-rich repeat signature 290 303 - -
Rops1g01922 985 PRINTS Leucine-rich repeat signature 245 258 - -
Rops1g01922 985 SMART serkin_6 686 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01922 985 ProSiteProfiles Leucine-rich repeat profile. 244 267 IPR001611 GO:0005515
Rops1g01922 985 Gene3D Ribonuclease Inhibitor 25 207 IPR032675 -
Rops1g01922 985 Gene3D Phosphorylase Kinase; domain 1 677 764 - -
Rops1g01922 985 FunFam Leucine-rich repeat receptor-like protein kinase 28 188 - -
Rops1g01922 985 SUPERFAMILY L domain-like 314 631 - -
Rops1g01922 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 196 976 - -
Rops1g01922 985 ProSiteProfiles Protein kinase domain profile. 686 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01922 985 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Rops1g01922 985 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Rops1g01922 985 FunFam leucine-rich repeat receptor-like protein kinase TDR 765 985 - -
Rops1g01922 985 SMART LRR_typ_2 169 192 IPR003591 -
Rops1g01922 985 SMART LRR_typ_2 242 266 IPR003591 -
Rops1g01922 985 SMART LRR_typ_2 529 553 IPR003591 -
Rops1g01922 985 SMART LRR_typ_2 193 218 IPR003591 -
Rops1g01922 985 SMART LRR_typ_2 290 314 IPR003591 -
Rops1g01922 985 Pfam Protein kinase domain 688 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01922 985 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Rops1g01922 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Rops1g01922 985 SUPERFAMILY Protein kinase-like (PK-like) 686 975 IPR011009 -
Rops1g01922 985 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Rops1g01922 985 Gene3D Ribonuclease Inhibitor 316 629 IPR032675 -
Rops1g01922 985 Gene3D Transferase(Phosphotransferase) domain 1 765 983 - -
Rops1g01922 985 Gene3D Ribonuclease Inhibitor 208 315 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01922 Rops-Chr1 39171068 39175142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01922 18 979 Receptor kinase-like Gene Family AT5G65710 57.406 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops1g01922 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01922 - - gmx:100813889 1495.33