Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01917 ATGTCTGGACCGATCGATCCCATTAGCAAGGTTTGTACGGGGCGTGAGGCTTGGAGATTGAAGGTCAGGATCGTTAGGCTTTGGTGTGTTCCGATGTTTAGTAATACATCTCAGATTAATTCCATCCAAATGGTTTTCATGGATGGACATGGAGAAAGGATTCAAGTTTCGGTGAAGAATACACTGTTGTATAAGTTCAAGTATTTTCTCCATGAGGGATTTGTCTTTATCTTCACTCATTTCACTGTTATTCCCAATGTTGGGATGTACAGGGCAACTTCACACTCCTTTCGGTTGCTTTTTACATTTAAGACTAAGTACACTGTGGTTGAGTATTCTATTATTCCTTTACTTGGCTTGCGTTTGGTTCTGTTTGATGATGTGCTTAAAAATGATCATGACTCTGATTATTTAGTTGACATTATTGGTCTGTTGACTTCTGTTTCCTCTGAGAAGGACATTGAAAAGGATGGGAAATTGTCCAAGATGATTGTTATTGAGTTGACTTCAAATATGGGTAAATTGGAATGTGCTCTGTTCGGTGATTATGTTGGGACCTTGATGGATTTTGTTGCTGTGGGTGTCAATGAGCATCCGGTGGTGATTATTCAACTTGCGAAAGTTAAATTATTTAGAGGCAAAATAGTGCTTCAAAATGTCATGCATGCAACTCGGCTCCTGTTTAATCCTGATGTTGCAGAAGCTGTGGATTTTAGGAATGGGATTGTTGAACATGGAATTATTGATGATGTTCCTCTTCTATCTGGGAATGATTCATTTAGTTTGTTTGCTGAGGATGAGTTCATGAAGTTGTACCCAAAGAAATCTCTAAAGCAGTTGCATGATATTTCTGAGAGTTCCATGAAGGTGTCAAGGAGGTTAATCAAGAATGGGAACAAAGTATTTAAGATTAGGATAACTGGTCCTGATCTTTTAGATATTAATTATAAGGTTGGTGATGTTGGTCCATTTGTTGGAGATGTTATTAGGAATGACAATGTTGGTGGTGATCGGAGTGATGTTGGTAGTCAGTTTCAACTCTTGTGGTCTGTCCAATTATCTGAAGCCCAATCGTCTGGTCGTCAGACTTTGTGCATTCCTGCGAGGATTGTCAGAGAATATTTCGATTTCCAGCAATCCTGTATGGTGGTTGTTTCTGATTCAAACCAATGTGAGCATTGGCATCTTTTGTGGGGAAAGACTAGGCGGGACAAGGCTGCCATTGGGATGGGGTGGTACAAGTTTTGCTCTGACAAGAAGCTGAAGAAGGGTGATAAAGTGCACTTCATGTATGAAAGCTCGGAGAAGGCATTCCGTGTTAATGTGAAGTCCTCTGCCTAA 1341 0.4012 MSGPIDPISKVCTGREAWRLKVRIVRLWCVPMFSNTSQINSIQMVFMDGHGERIQVSVKNTLLYKFKYFLHEGFVFIFTHFTVIPNVGMYRATSHSFRLLFTFKTKYTVVEYSIIPLLGLRLVLFDDVLKNDHDSDYLVDIIGLLTSVSSEKDIEKDGKLSKMIVIELTSNMGKLECALFGDYVGTLMDFVAVGVNEHPVVIIQLAKVKLFRGKIVLQNVMHATRLLFNPDVAEAVDFRNGIVEHGIIDDVPLLSGNDSFSLFAEDEFMKLYPKKSLKQLHDISESSMKVSRRLIKNGNKVFKIRITGPDLLDINYKVGDVGPFVGDVIRNDNVGGDRSDVGSQFQLLWSVQLSEAQSSGRQTLCIPARIVREYFDFQQSCMVVVSDSNQCEHWHLLWGKTRRDKAAIGMGWYKFCSDKKLKKGDKVHFMYESSEKAFRVNVKSSA* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01917 446 Gene3D - 115 247 IPR012340 -
Rops1g01917 446 CDD RPA1_DBD_A_like 19 106 - -
Rops1g01917 446 CDD RPA1_DBD_B_like 140 239 - -
Rops1g01917 446 Gene3D - 4 109 IPR012340 -
Rops1g01917 446 CDD B3_DNA 364 442 IPR003340 GO:0003677
Rops1g01917 446 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Rops1g01917 446 SUPERFAMILY DNA-binding pseudobarrel domain 359 440 IPR015300 -
Rops1g01917 446 Gene3D - 337 445 IPR015300 -
Rops1g01917 446 ProSiteProfiles B3 DNA-binding domain profile. 349 446 IPR003340 GO:0003677
Rops1g01917 446 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Rops1g01917 446 Pfam B3 DNA binding domain 352 442 IPR003340 GO:0003677
Rops1g01917 446 SUPERFAMILY Nucleic acid-binding proteins 125 241 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01917 Rops-Chr1 39137484 39142294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01917 4 282 Core DNA Replication Machinery Family AT4G19130 21.724 4.49e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g01917 B3 6.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01917 - - adu:110276578 268.855