Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01914 ATGGGTCTTGATCAGGATTCCAATAACTCCGGCCTTCACCTTGTTCTAGGGTTATCTTTGGCTGGTGGTACTGCAAATGAAACTACCACTTCCCCTCCATCAAGCAAGGTTGATAATAGTCTTTGTCTTAAGCCAACGCCCTCCAATGAGCCATCTTTAACGTTGGGTCTCTCTGGTGAGAGTTACCTGGCCAAGCAAATACCCAGAAATAAAATGGATGGGAACAGGGTTTATTGTGAGGACCCTCTTGAATTATCTAGACAGACTTCACCTCACAGCGTTGTTTCTTCTTTCTCCACTGGGAGGGTGGTTAAGAGGGAGAGGGATCTTAGCTGTGAAGAGGTAGAAGCAGAAGCAGCAGAAGAGAGGGTTTCTTCAAGAGTGAGTGATGAAGATGAAGATGGCACTAATGCCAGAAAGAAACTCAGGCTTACCAAAGAACAATCTGCACTGCTAGAGGAGAGTTTCAAACAACACAGCACCCTCAATCCTAAACAAAAACAAGCTTTAGCCAGACAGCTGAATCTACGGCCTCGTCAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGTTGTGAAACGTTGACTGACGAAAACAGAAGGCTAAAGAAGGAGCTGCAAGAGTTGAAGGCACTGAAACTAGCACAACCCTTGTACATGCCTATGCCTGCAGCCACCCTCACCATGTGCCCCTCTTGCGAGAGGCTCGGTGGTGTGAGTGATGGAGCTTCCAATAAGAGTCCCTTCACCATAGCTCCCAAGCCTCACTTCTATAATCCCTTCACCAATCCTTCTGCAGCATGTTGA 855 0.469 MGLDQDSNNSGLHLVLGLSLAGGTANETTTSPPSSKVDNSLCLKPTPSNEPSLTLGLSGESYLAKQIPRNKMDGNRVYCEDPLELSRQTSPHSVVSSFSTGRVVKRERDLSCEEVEAEAAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDGASNKSPFTIAPKPHFYNPFTNPSAAC* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01914 284 SMART HOX_1 137 199 IPR001356 GO:0003677
Rops1g01914 284 MobiDBLite consensus disorder prediction 23 55 - -
Rops1g01914 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 264 - -
Rops1g01914 284 MobiDBLite consensus disorder prediction 116 144 - -
Rops1g01914 284 Pfam Homeobox associated leucine zipper 195 229 IPR003106 GO:0006355|GO:0043565
Rops1g01914 284 SUPERFAMILY Homeodomain-like 137 203 IPR009057 -
Rops1g01914 284 SMART halz 195 238 IPR003106 GO:0006355|GO:0043565
Rops1g01914 284 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Rops1g01914 284 Pfam Homeodomain 139 193 IPR001356 GO:0003677
Rops1g01914 284 Coils Coil 201 231 - -
Rops1g01914 284 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Rops1g01914 284 Gene3D - 143 193 - -
Rops1g01914 284 CDD homeodomain 139 196 IPR001356 GO:0003677
Rops1g01914 284 FunFam Homeobox-leucine zipper protein 18 123 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01914 Rops-Chr1 39031824 39033383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01914 1 284 Homeobox Transcription Factor Family AT4G37790 62.963 3.08e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops1g01914 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01914 K09338 - gmx:100795135 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01914 1 39031824 39033383 Rops2g04403 2 80406560 80408156 PCT