Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01910 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAAGCTTACATCGAGCAGCATGGTACCGGTGGCAACTGGATAGCCCTGCCCCAGAAGATAGGCCTTAAGAGATGTGGAAAAAGTTGTCGTCTTAGATGGTTGAATTATCTTCGTCCAAACATTAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAATTACCAGGGCGCACAGATAATGATATAAAGAATTATTGGAACACCAGGCTGAAGAAGAAGCTCCTTGGCAAGCAAAGGAAGGAGCAACAAGCTCAGGCTCAAGCTCAAGCTCGTCGAGTCAGCAACCTGAAGCAAGAGATGAAAAGAGAAACAGAGAATTTGAGGGTGGCTTCTGAAGTTAACATCAATCAAACTCCCTATTGGCCAGTAGAGTACTCTATGTCCATGCCAGTCCATGACTATGATCTAAATGGTCAAACATCCTTTAGGAGTTTGCTAATTGACAAAATAGGGGGAGCTAGATTTTACCATGATCATCAACAGCCATACACCAACACAGTCACTGCCACCATAAATTCTCAAGACACATGTGACATTCCCTCCCCACAAGACCAGGTTTATCCAACCACAATGAACATGATAAACCCAGTGACCATGGTGAATAATGCAAACAATGGTGGCACTTGTCAGCCATCAAATGTATTTCAAGGGTTTGAAAACTTCCCAACTTATTTAAATGAGCTGGTCTGTGTGAACCCGCAACAAACGGATCAAACAATGGAGGGTTTTTTTAGAATGGAATCCATGGATATGAGCAATGGTAGCGCGATCACTACCTCAACAGAAAGCACTAGTTGGGGAGATATGAGCTCTTTGGTTTACTCACCTTTGGTTTCTGACTATGAAGGTTGCCGACAAGGGATTCCTCAAGATGTTGCTTTCGATGAGTCTAGGTATTTTGGAATGCAAATGCAATAA 1047 0.4365 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQAQARRVSNLKQEMKRETENLRVASEVNINQTPYWPVEYSMSMPVHDYDLNGQTSFRSLLIDKIGGARFYHDHQQPYTNTVTATINSQDTCDIPSPQDQVYPTTMNMINPVTMVNNANNGGTCQPSNVFQGFENFPTYLNELVCVNPQQTDQTMEGFFRMESMDMSNGSAITTSTESTSWGDMSSLVYSPLVSDYEGCRQGIPQDVAFDESRYFGMQMQ* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01910 348 Gene3D - 70 147 - -
Rops1g01910 348 CDD SANT 71 113 IPR001005 -
Rops1g01910 348 Gene3D - 7 68 - -
Rops1g01910 348 SMART sant 67 115 IPR001005 -
Rops1g01910 348 SMART sant 13 64 IPR001005 -
Rops1g01910 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops1g01910 348 FunFam Transcription factor RAX3 70 149 - -
Rops1g01910 348 FunFam Transcription factor RAX3 7 68 - -
Rops1g01910 348 Coils Coil 122 156 - -
Rops1g01910 348 PANTHER OS09G0431300 PROTEIN 1 253 - -
Rops1g01910 348 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops1g01910 348 CDD SANT 16 62 IPR001005 -
Rops1g01910 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops1g01910 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops1g01910 348 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops1g01910 348 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops1g01910 348 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01910 Rops-Chr1 38939330 38940803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01910 1 318 MYB Transcription Factor Family AT3G49690 48.503 3.10e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01910 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01910 K09422 - gmx:100812816 482.641