Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01906 ATGAAGTCCATGGAAAATGATGATACAGTTAACGTTAACAATCACAATAACTGGTTGGGTTTCTCCCTCTCTCCCCAAATGAATATAGGTGTTCCTTCACAGCCTTCCTCTGCTGCTGCTGAAGCAATTCCACCAGGCTTTCATCACCCTACACTTCTTCATAACTCTGGCTTTTGCTATGGACTAGAAGGTGAACATGTTGAATTGTATTCAACCTTGCCTATCATGCCCTTCAAATCTGATGGCTTGCTATATGGAATAGAAGCTCTGAGTACATCACAAGCACAAGCAATGGTTACTACTTCAACACCAAAACTGGAAAATTTCTTTGGTGGCCAAACGATGGCAATCCCTCAATATGAATGCAATAGCAAAGAAGCAATGCATCTGAGCTTAGATAGTATGTTTTACAATCCAAATAACCTTAATCATGTGCAAGAGAATATCAGCCAGCAACAATTATCATATTACTCTGCCTTGAGAAACAATGGTGTGATGTTAGATGAAGGGTACAAGCAAAATCAAATTTCATACAGTCACCAACTCCGAAATATGGTTGAGGATGAAATTCCTGGTTTGAAGAGTTGGGTCTCAAGGGACTTTTCTGCTAGCCATGCACCTGAGTTCAAGATGATTGTTCCTGTGGAGGATAATAGAAGCGAATCAGTGTCCATTGGATCAATGACACATGCTGATTTACATTCATTGAACTTGTCTATGAGTCCTAACTCACAATCAAGCTGTGTTACAAGTTCACAACGGATATCACCTGCTCTCAATGATTCTGTTGCCATGAATACGAAGAAAAGGGGGTCTGAAATGGTGGACCTGGAACAGAATCAGAAGCAAAACGTTATTAGAAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAGGGCAAAGGCAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGATCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCATTTAAATTTTCCATTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGACAAGAACATGTTGCTCATTTACGGAGGAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATTTACAGAGGAGTGACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATAGCTGCCATAAAATTCCGAGGAGTTAATGCTGTTACTAACTTAGATACAACAAGATATGATGTGGAAAAAATTATGGCAAGTAGTAACCTTCTTAGCAGTGAACTAGCTAAGCGAAACAAAGAGATGGATGGTGGAACTGGGAACGAAGCTATTAACCATGAACCTTATAAATATGAAGACACTCAAGAAGGCACTCTAATGCAGAGGAGGAGTTATAAAAGCCAATCAGAGTGTAAGATGGTTCTCTATCAACCCTCCAAACAACTTGATCAGAATCCACCAACAACTCATATGTCAAATCCATCTTCATTTGTGACAAGCTTGAGCAGCTCAAGAGAAGAAAGCCCAGATAAGACAAGCTTGCCAATCCTCTTTGGAATGCCTTCAACTGCATCTAAATTATTGGCTACCATTTCAACTAGTAACGTGGGTTCTTGGGAGACATCTACACATCTCAGACCTGCGCTTTCTTTGCCTCAGATGCCAGTCTTTTCAGCTTGGACCGATGCATAA 1845 0.4098 MKSMENDDTVNVNNHNNWLGFSLSPQMNIGVPSQPSSAAAEAIPPGFHHPTLLHNSGFCYGLEGEHVELYSTLPIMPFKSDGLLYGIEALSTSQAQAMVTTSTPKLENFFGGQTMAIPQYECNSKEAMHLSLDSMFYNPNNLNHVQENISQQQLSYYSALRNNGVMLDEGYKQNQISYSHQLRNMVEDEIPGLKSWVSRDFSASHAPEFKMIVPVEDNRSESVSIGSMTHADLHSLNLSMSPNSQSSCVTSSQRISPALNDSVAMNTKKRGSEMVDLEQNQKQNVIRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGKGRKGRQVYLGGYDMEEKAARSYDMAALKYWGPSTHLNFPLENYQNELEEMKNMTRQEHVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNLDTTRYDVEKIMASSNLLSSELAKRNKEMDGGTGNEAINHEPYKYEDTQEGTLMQRRSYKSQSECKMVLYQPSKQLDQNPPTTHMSNPSSFVTSLSSSREESPDKTSLPILFGMPSTASKLLATISTSNVGSWETSTHLRPALSLPQMPVFSAWTDA* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01906 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 534 - -
Rops1g01906 614 SUPERFAMILY DNA-binding domain 400 459 IPR016177 GO:0003677
Rops1g01906 614 CDD AP2 298 365 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 Pfam AP2 domain 299 357 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 Pfam AP2 domain 401 451 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 CDD AP2 400 461 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 Coils Coil 366 386 - -
Rops1g01906 614 ProSiteProfiles AP2/ERF domain profile. 401 459 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 MobiDBLite consensus disorder prediction 529 561 - -
Rops1g01906 614 SMART rav1_2 401 465 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 SMART rav1_2 299 371 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 FunFam AP2-like ethylene-responsive transcription factor 400 461 - -
Rops1g01906 614 SUPERFAMILY DNA-binding domain 298 367 IPR016177 GO:0003677
Rops1g01906 614 FunFam AP2-like ethylene-responsive transcription factor ANT 298 367 - -
Rops1g01906 614 Gene3D AP2/ERF domain 298 367 IPR036955 GO:0003700|GO:0006355
Rops1g01906 614 Gene3D AP2/ERF domain 401 460 IPR036955 GO:0003700|GO:0006355
Rops1g01906 614 ProSiteProfiles AP2/ERF domain profile. 299 365 IPR001471 GO:0003700|GO:0006355
Rops1g01906 614 MobiDBLite consensus disorder prediction 529 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01906 Rops-Chr1 38854081 38858012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01906 1 614 AP2-EREBP Transcription Factor Family AT4G37750 45.427 3.70e-159 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops1g01906 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01906 K09285 - gmx:100787611 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01906 1 38854081 38858012 Rops2g04413 2 80663622 80667753 PCT