Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01902 ATGCCTATGTTTCAGCCTTCTAAAAGGGATATGGTTGCTGGGTTCGAGGGTGGTGGCGATGGCCAGATTCTAGATCTGGACACTGCCGTCAAAGATGGTGTTTTGGGTGGGGTTGAGGGTGGGGTTGTGGGAACTAGGGTGGGTGATAAGTTGGATCTGGGGAAGATGGTTGAAGAGCTTGAGTTATGTCAAGTGCCAAGTGTGTTCATTTGCCCAATCTCGTTGGAACCAATGCAAGACCCAGTGACCCTTTGCACTGGCCAAACCTACGAGAGGTCCAACATTCTGAAATGGTTCAACTTGGGGCACTTGACATGCCCCACCACGATGCAAGAGCTTTGGGATGATTCAATCACCCCAAACACCACCCTTTACAGGCTCATATACACGTGGTTCTCTCAGAAGTACCTGCTGATGAAGAAGAGGTCGGAAGATGTTCAGGGGAGGGCTTCTGAACTTGTGGAGACACTGAAGAAGGTGAAGGGTCAAGCTAGAGTTCAGGCTCTCAAGGAGCTTCATCAAGTGGTGGCTGCTCATTTCACTGCCCGGAAGACAGTGATTGATGAAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCCCATGCTGTTGGTTCCGAAGTCATTGGTATTCTTGTGAGTTTGACCCTTGATTCGGAATCCAAAAAGAATCTTATGCAGCCTGCGAAAATTTCATTGATGGTGGATATCTTGAATGAGGGTTCCATCGAGACGAAAATCAATTGCACGCGACTGATTGAATCGTTAATTGATGAGAATGATTTTCGTTCTGAGATTATTTCAAGCCATAGCCTTTTGGTAGGGTTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATCTGTCCTGGGCTAAGCCTTCTCAGAACAATATGCTTGCATAAAGAAGTTAGGAATTTGCTAGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAACCTGATTGTTTGGAATTAGCCCTTTGTGTTTTGGATGCATTGGCATCTATACCTGAAGGCAGAGTGGCTTTGAAGGATTGTTCTAACACCATACCCATAATGGTGAAACTGTTGATGAGGATCTCAGAGAACTGCACCCAGTATGCATTGTCAATCTTATGGTCCGTGTGCAAGCTTGCACCTGAGGAGTGCTCGTTGATTGCCGTCGATGCAGGGCTTGCTGCAAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATATTGAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGCAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATTCAATGA 1350 0.4541 MPMFQPSKRDMVAGFEGGGDGQILDLDTAVKDGVLGGVEGGVVGTRVGDKLDLGKMVEELELCQVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHQVVAAHFTARKTVIDEGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIDENDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTICLHKEVRNLLVSIGAVSQLVELLSGLEPDCLELALCVLDALASIPEGRVALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSLIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01902 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Rops1g01902 449 SUPERFAMILY RING/U-box 59 135 - -
Rops1g01902 449 Gene3D - 139 440 IPR011989 -
Rops1g01902 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Rops1g01902 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Rops1g01902 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Rops1g01902 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
Rops1g01902 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Rops1g01902 449 PANTHER WDSAM1 PROTEIN 59 435 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01902 Rops-Chr1 38699327 38700676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01902 1 449 U-box Gene Family AT3G49810 76.392 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01902 - - gmx:100779827 811.216