Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01892 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTGAAAGCGGGAGTAATCAAACATGGGGCTGGAAAATGGCGCACTATACTTACAGACCCAGAGTTTAGTGCCATTTTGCGCATGCGTTCAAACGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCCAGGCAGAGGGCGAAGCTTGCCCTTAAAAGGAACCAACCAACCCCCAAAACTGACAATAACCCCACAGCCTTGAGTATTGTAGTTCAACATAATGAAGTTGCAGATAATAAGCCTCGAGCAGTTTCTGGTGGAATATCTCCCGATTCAAAAGAACAAATATCCAGGTTGGATAATCTTATATTAGAGTCTATTATCAAGTTGAAGGAGGCAAAGGGTTCTGACCGGGCTGCCATTGCTACTTATATAGAGGATCAATACTGGTCTCCACCAAACCTCAGAAAGTTACTGTCAACAAAACTGAAGCATATGGTAGCAAGTGGCAAATTAATGAAGATAAAGCATAGGTACAGGATTGCAATGACTTCGACAATATCTGAGAAAAGAAGATGCTCTTCATTGTTACTCTTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAAGACCCATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGCTATCGAAAATGAAGGGAGTGACGGCTCAAGAGGCAGCAGCAGCAGCTGCAAAAGCAGTTGCTGAGGCAGAAGCTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAAGCAGAGGCTGCAGAAGCCGAAGCAGAGGCTGCACAAGTGTTCGCAAAAGCAGCCATGAAGGCACTAAAATGCAAAACACTTCATATTTGCTCTATCCTATCATTTACCTGTGCCTATCCAATTGGTCCAGAACAACGTGTGACAAAATCTATGTTAAAATTCTTCACTCTTATACTTAGTTTCTATTCACTAGAAGCCCCAACCTTCTTCATTACATTTTTTGCCTGCCAAAACCTTGTCTCTTGTGTAAAGACCCCTGTTTTGTGTATTACTGCATCTGAGAGATGGTGTCAGCTTCTGCATGGTTGA 1095 0.4384 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQRAKLALKRNQPTPKTDNNPTALSIVVQHNEVADNKPRAVSGGISPDSKEQISRLDNLILESIIKLKEAKGSDRAAIATYIEDQYWSPPNLRKLLSTKLKHMVASGKLMKIKHRYRIAMTSTISEKRRCSSLLLLEGRPKDSPKAEKTHVNILSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKTLHICSILSFTCAYPIGPEQRVTKSMLKFFTLILSFYSLEAPTFFITFFACQNLVSCVKTPVLCITASERWCQLLHG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01892 364 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Rops1g01892 364 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01892 364 Gene3D - 2 59 - -
Rops1g01892 364 PANTHER SINGLE MYB HISTONE 4 1 287 IPR044597 GO:0003691
Rops1g01892 364 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Rops1g01892 364 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Rops1g01892 364 CDD SANT_TRF 6 57 - -
Rops1g01892 364 Coils Coil 239 276 - -
Rops1g01892 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Rops1g01892 364 Gene3D - 114 193 IPR036388 -
Rops1g01892 364 Pfam linker histone H1 and H5 family 121 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01892 364 FunFam Telomere repeat-binding factor 1 2 58 - -
Rops1g01892 364 CDD H15 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01892 364 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01892 364 SUPERFAMILY "Winged helix" DNA-binding domain 115 193 IPR036390 -
Rops1g01892 364 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01892 Rops-Chr1 38589125 38593362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01892 1 287 Single Myb Histone (SMH) Gene Family AT5G67580 57.338 1.56e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops1g01892 Linker_histone 5.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01892 K09422 - gmx:778165 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01892 1 38589125 38593362 Rops2g04426 2 80935588 80943149 PCT