Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01887 ATGGATACCTTGTTTAGACTTGTTAGTTTTCAACAACAACAAGAAGATCAATCCCTTAACTCCACCACCAGCAGAACATCAAGTGGCTCCAGATCCTCAAGACAAAACTATCACTACCAACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTATCCTCGTCTTCTTCTAGACAACACTACTATTCCTATCAACCCCACCCCTACCCCTCCACTACCACTACCACTGCTACAAACACAGCCACCACCACCACTACCACTGATTTCTCATTCTCACCCATCCGTGACTTTAACTTGGACTTCTCCGGCAAGTGGGCCCACGACATCCTTCTAGAAACCGCACGTGCCATTGCTGAGAAGAACACCACCCGCGCCCAACAATTCATGTGGATGCTCAATGAACTCAGTTCCCCTTACGGTGACACCGATCAGAAGCTCGCAGCTTATTTCCTCCAAGCCTTGTTTGGCCGCATAACCGAAGCTGGAGACCGAACCTACCGAACCTTAACCTCTGCATCGGAAAAAACATGCTCCTTCGAATCAACGAGGAAAACGGTTTTGAAGTTCCAAGAGGTTAGTCCATGGACAACGTTCGGCCACGTGGCTTGCAATGGCGCCATTCTAGAAGCCTTCGAAGGAGAACCAAAGTTGCACATAGTTGACATAAGCAACACCTATTGCACTCAATGGCCTACTCTCTTTGAAGCTCTTGCCACTCGAAACGATGACACTCCGCACCTCCGTTTAACCACTGTCGTCACCGGTGGTTCCTTTCAGAGGATCATGAAGGAAATAGGCACAAGAATGGAGAAATTCGCGAGGCTCATGGGTGTTCCATTTAAATTCAACGTTATTCACCATACTGGTAATCTTTCAGACTTGGATTTCTCACAGTTGGATATAAAGGAGGACGAGGCCTTGGCCGTTAACTGTGTTAATTCTCTGCATTCGGTAACCACCGTCGGTAACCAACGTGAAATGTTGATATCTTCGTTGAGGAGGTTGCGGCCGAGGATAGTGACGGTGGTGGAAGAGGAAGCTGAATTGGATGTTGGTTTGGAAGGGTTTGAGTTTGTGAAAGGTTTTGAACAATGCTTGAGATGGTTTAGGGTTTACTTTGAGGCTTTGGATGAGAGTTTTCAGAAGACAAGCAACGAGCGTTTGATGCTTGAACGTGCGGCGGGGAGAGCCATCGTTGACTTGGTGGCTTGTCCACCGTTGGAGTCGACAGAGCAGCGTGAGACGGCTGCGCGGTGGTCGCAGCGTCTGCATGGAGGGGGATTCAATACGGTGCCGTTTAGTGAAGAGGTTTGTGATGATGTGAGAGCGTTGTTGAGGAGGTATAAGGAAGGGTGGTCAATGACACAGTGCTCCGACTCCGGAATATTCTTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1452 0.4869 MDTLFRLVSFQQQQEDQSLNSTTSRTSSGSRSSRQNYHYQQEDEECFNFFMDEEDLSSSSSRQHYYSYQPHPYPSTTTTTATNTATTTTTTDFSFSPIRDFNLDFSGKWAHDILLETARAIAEKNTTRAQQFMWMLNELSSPYGDTDQKLAAYFLQALFGRITEAGDRTYRTLTSASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEAFEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTTVVTGGSFQRIMKEIGTRMEKFARLMGVPFKFNVIHHTGNLSDLDFSQLDIKEDEALAVNCVNSLHSVTTVGNQREMLISSLRRLRPRIVTVVEEEAELDVGLEGFEFVKGFEQCLRWFRVYFEALDESFQKTSNERLMLERAAGRAIVDLVACPPLESTEQRETAARWSQRLHGGGFNTVPFSEEVCDDVRALLRRYKEGWSMTQCSDSGIFLTWKEQPVVWASAWRP* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01887 483 MobiDBLite consensus disorder prediction 15 37 - -
Rops1g01887 483 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 472 IPR005202 -
Rops1g01887 483 ProSiteProfiles GRAS family profile. 101 482 IPR005202 -
Rops1g01887 483 Pfam GRAS domain family 112 482 IPR005202 -
Rops1g01887 483 MobiDBLite consensus disorder prediction 15 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01887 Rops-Chr1 38541241 38543282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01887 1 483 GRAS Transcription Factor Family AT4G37650 60.338 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops1g01887 GRAS 3.2e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01887 - - gmx:100820459 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01887 1 38541241 38543282 Rops1g01887 1 38541241 38543282 ECH
Rops1g01887 1 38541241 38543282 Rops2g04430 2 80968686 80970375 PCT