Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01886 ATGGGGAAGAAGCAGCACAGTAAAGATCGTATGTTCATCACTAAAACCGAATGGGCAACGGAATGGGGAGGCGCCAAATCCAAAGAGAATCGCACTCCTTTCAAACGTCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCGTTTGAGTATCCGGTTTGCACAGCTGATGGCAGTGTTTTCGATGTTATGAACATAACTCCCTATGTTATAAAATATGGTAAACATCCTGTCACTGGAGCTCCTTTGAAGCAGCAAGATCTCATTCCACTAACTTTCCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTGAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACTACCGGAAATGTGTTCTGCTATGAGGCTGTTAAGGAATTGAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACGGATGAGCCATTTACTAAGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAACACCATTTGAAAATTGACGATGAAGAACTACAGAGAATGAGTTCAGATCCAACCTATAACATAAACATTTCGGGTGATATCAAGCAAATGCTTCAGGAGCTTGGAACTGAGAAAGGAAAGGAAACTGCAATGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTGTTAAAGAGGATTCTAAATCAAATCCAAATGGAGAAGTCGAAGCTCCTCAGGCATTTAGTATTGTAGATGCAGCATCTGCCTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGAATAGCTATGCACATGGCTGGTGACAGGGCGCCAGTGAATGCAAAGCTGGTAAAAAGCCGCTTCACTACTGGTGCTGCTTCCCGTTCTTTCACTTCAACATCATTTGATCCAGTGACAAAAAATGATTTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACACGGTGATTTGAACATTGAGCTGCATTGTGATATAACACCCAGGACATGTGAGAACTTTATCACGCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGGAATTTTATGCTACAAGGTGGTGATCCTACTGGCACTGGTAGAGGGGGTGAATCAATCTGGGGAAAGACTTTTAAAGATGAACTTAACTCCAAATTAATTCACTCTGGAAGGGGTGTGGTCAGCATGGCAAACAGTGGCCCACACACAAATGGTTCCCAGTTTTTTATCTTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTTGGTGGTTTGACTACACTAGCAGCAATGGAAAAGGTTCCTGTTGATGATAATGACCGACCTCTGGAAGAAATCAAGATAACAAGTGTCACAATTTTTGTCAATCCTTACACAGAACCAGATGAGGAAGAAGAGCAGGAAAATGCCAAAGAGAAGAATGCAGAGGATGAGGATAATGATAAGGTTGGCTCATGGTATAGTAATCCTGGCGCTGGAACAACTGAATCTGGAGGTACTGGGGTTGGAGGTGGTGTTGGCAAGTACTTGAAAGCTAGGAAAGCTCAAGCTGAATCTGCTACTGTTGACACCAGTACAGCCGTCGTAGGAAAGAAAAGAAAAGCAGGAGTTGTCAGTGGACAATTCAAAGATTTTTCTGCGTGGTAG 1791 0.4227 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYVIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKHHLKIDDEELQRMSSDPTYNINISGDIKQMLQELGTEKGKETAMHGGGGGKAQKERAAALAAILAARSRVKEDSKSNPNGEVEAPQAFSIVDAASASVHGRSAAAAKASSGDKTAARIAMHMAGDRAPVNAKLVKSRFTTGAASRSFTSTSFDPVTKNDFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMLQGGDPTGTGRGGESIWGKTFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTIFVNPYTEPDEEEEQENAKEKNAEDEDNDKVGSWYSNPGAGTTESGGTGVGGGVGKYLKARKAQAESATVDTSTAVVGKKRKAGVVSGQFKDFSAW* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01886 596 SUPERFAMILY RING/U-box 37 104 - -
Rops1g01886 596 Gene3D - 331 515 IPR029000 -
Rops1g01886 596 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Rops1g01886 596 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 515 IPR044666 -
Rops1g01886 596 SUPERFAMILY Cyclophilin-like 350 511 IPR029000 -
Rops1g01886 596 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Rops1g01886 596 CDD cyclophilin_RING 350 507 - -
Rops1g01886 596 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Rops1g01886 596 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Rops1g01886 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Rops1g01886 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Rops1g01886 596 MobiDBLite consensus disorder prediction 506 550 - -
Rops1g01886 596 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Rops1g01886 596 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01886 Rops-Chr1 38518438 38525643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01886 1 596 U-box Gene Family AT5G67530 76.412 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01886 K10598 - gmx:100819923 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01886 1 38518438 38525643 Rops1g01886 1 38518438 38525643 ECH