Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01881 ATGAAGTTCAATCCAAGGGTTTCAAGCAGCCGGCGCAAGAGCCGCAAGGCGCATTTCTCGGCGCCGTCGAGCGTGCGGCGCGTGCTGATGAGTGCGCCACTCTCCGGTGACCTTCGTTCGAAGTACAACGTGAGGTCCATGCCGGTTCGGAAGGACGACGAGGTGCAAGTGGTGAGGGGAACTTACAAGGGACGTGAGGGTAAGGTGGTGCAGGTTTATCGCCGGAAATGGGTGATCCACATCGAGCGTATCACACGTGAGAAGGTTAACGGTACAACCGTCAACGTTGGAATCCACCCTTCAAAAGTGCTCATCACTAAGCTCCGTTTGGATAAGGATCGTAAGTCATTGCTCGATCGTAAGGCTAAGGGTCGTGCCGCCGCTGACAAGGAAAAGGGTACCAAGTTTGCTCCTGAGGATATCATGCAGACCGTTGATTAG 441 0.5442 MKFNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIHPSKVLITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFAPEDIMQTVD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01881 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Rops1g01881 146 NCBIfam 50S ribosomal protein L24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Rops1g01881 146 MobiDBLite consensus disorder prediction 1 20 - -
Rops1g01881 146 MobiDBLite consensus disorder prediction 1 22 - -
Rops1g01881 146 Pfam KOW motif 51 82 IPR005824 -
Rops1g01881 146 SMART kow_9 48 75 IPR005824 -
Rops1g01881 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Rops1g01881 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Rops1g01881 146 Gene3D - 1 143 IPR014722 -
Rops1g01881 146 MobiDBLite consensus disorder prediction 120 146 - -
Rops1g01881 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Rops1g01881 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Rops1g01881 146 MobiDBLite consensus disorder prediction 120 137 - -
Rops1g01881 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 141 IPR005756 GO:0003735|GO:0006412|GO:0015934
Rops1g01881 146 FunFam 60S ribosomal protein L26 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01881 Rops-Chr1 38465297 38465975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01881 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 86.986 5.74e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01881 K02898 - gmx:100819391 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01881 1 38465297 38465975 Rops1g01881 1 38465297 38465975 ECH