Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01879 ATGATGGAGAGTTATTTGAATGAGAATTTTGGAGGAGTGAAGTCCAAGAACTCCTCCGAAGATGCTCTGCAAAGATGGAGGAAACTATGTGGGGTTGTAAAGAACCCCAAAAGGCGTTTCCGTTTCACTGCCAATCTCTCCAAGAGGGGCGAAGCTGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTCGCAGTTTTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGGCGTGCAACCAAGCGATTACAAAGTGCCAGAGGAAGTTAAAGCTGCAGGATTTCAAATCTGTGCTGATGAATTGGAGCCTATTGTTGAAGGCCGTGATGTAAAGAAGTTCAAATCTCATGGTGAGGTTGATGGCATTGCAGAAAAGCTTTCTACATCAACCACTGAGGGGCTTAGCAGTGATGCAGATTTACTGAATAAGAGACAACAGATATATGGAATCAATAAATTTACTGAAAGTGCAGCTCGGAGTTTCTGGTTTTTTGTCTGGGAAGCTCTTCAAGACATGACTCTCATGATACTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCATTGCGACTGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTGGTTGTCTTCGTTACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGACAAGGAGAAGAAGAAAATTTCCGTTCAGGTCACAAGAAATGGATATAGGCAGAAAATGTCAATATATGAATTACTTCCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACAGGAGAGAGTGAGCCAGTGGTGGTAAATTCTGCAAATCCATTTCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGGTTACCACTGTTGGGATGAGGACTCAATGGGGGAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACCCCATTACAGGTGAAATTGAATGGAGTGGCAACCATTATTGGGAAGATTGGCCTATTCTTTGCAGTGGTCACTTTTTCAGTTCTGGCGCAAGGACTAGTAAGCCGTAAACTCCAACAACAAAGCTTCTGGAGCTGGACCGGGGATGATGCATTGGAGATGTTGGAGTTCTTTGCAGTTGCAGTTACCATCGTTGTTGTTGCTGTTCCAGAGGGGCTGCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAGAAGATGATGAATGACAAAGCCCTTGTTCGACATTTGGCAGCTTGTGAGACCATGGGATCAGCCACAACTATCTGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTGGTGAAAACTTGCATTTGCATGAATAGCAAGGAGGTAAGCAATAGCACATCTAGTTTGTGCTCTGAACTCCCTGAAGCTGCTGTGAAACTGCTGCTACAGTCAATATTCAATAATACAGGAGGAGAGGTTGTGGTTAACAAAGATGGAAAACGTGAGATTTTAGGGACACCAACCGATACTGCAATATTGGAGTTTGGCTTGTCATTAGGTGGTGATTTTCAAGGAGAGAGACAAGCATGTAAGCTTATTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGAGTGTAGTGGTGGAGCTCCCTGGTGGAGGTTTACGTGCACACTGTAAAGGTGCTTCTGAAATAATTCTAGCTGCTTGTGACAAAGTTCTCAACTCAAATGGTGAGGTTGTTCCCCTTGATGAAGAATCAACTAACCATCTTAAGGATACAATAAACCAGTTTGCTAGTGAGGCACTTAGAACTCTATGCCTTGCCTATGTGGAATTGAAAAATGGGTTCTCTGCTGAAGACCCTATTCCTATTTCTGGTTATACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTAGCAGAATGTCGTTCAGCTGGAATAAAAGTAAGAATGGTTACAGGTGACAATATTAATACTGCAAAAGCTATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGACTTTAGAGAGAAGAGTCTAGAAGAGTTGCTTGAATTGATTCCCAAAATTCAGGTTATGGCACGATCCTCACCTTTAGACAAACATACATTGGTAAAACACCTGCGTACCACGTTTGGGGAGGTGGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCTCTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTGATAATTCTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTGACAGTTAATGTGGTTGCATTAATAGTGAACTTCACATCAGCCTGCTTGACAGGAACTGCACCTCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACATTGGGAGCACTTGCACTTGCAACTGAACCTCCAAATGATGATTTAATGAAGCATGCACCGGTTGGAAGAAAAGGGAATTTCATCAGTAACGTCATGTGGAGGAATATCTTAGGACAATCACTCTATCAGTTTATGGTGATCTGGTTCCTTCAGTCACAAGGAAAATCAATCTTTTCACTTAATGGCCCCGATTCCGATCTGGTCTTAAACACACTTATTTTCAACTCATTTGTATTCTGTCAGATTTTCAATGAGATAAACTCACGTGAGATGGAGAAAACTAATGTTTTCAAAGGCATATTGGATAATTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTTCAAATCATCATAGTTGAGTACTTGGGAACCTTTGCAAACACAACTCCTCTCACTCTGGTGCAGTGGTTCTTTTGCTTATTTGTTGGATTTTTGGGTATGCCTATTGCTGCTCGCCTAAAGAAGATCCCTGTCTGA 3048 0.4219 MMESYLNENFGGVKSKNSSEDALQRWRKLCGVVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYKVPEEVKAAGFQICADELEPIVEGRDVKKFKSHGEVDGIAEKLSTSTTEGLSSDADLLNKRQQIYGINKFTESAARSFWFFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISVQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVVVNSANPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLAQGLVSRKLQQQSFWSWTGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSKEVSNSTSSLCSELPEAAVKLLLQSIFNNTGGEVVVNKDGKREILGTPTDTAILEFGLSLGGDFQGERQACKLIKVEPFNSTKKRMSVVVELPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTNHLKDTINQFASEALRTLCLAYVELKNGFSAEDPIPISGYTCIGVVGIKDPVRPGVKESVAECRSAGIKVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSLEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKHAPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSQGKSIFSLNGPDSDLVLNTLIFNSFVFCQIFNEINSREMEKTNVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLVQWFFCLFVGFLGMPIAARLKKIPV* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01879 1015 Gene3D - 464 658 IPR023299 GO:0000166
Rops1g01879 1015 SUPERFAMILY Calcium ATPase, transduction domain A 239 334 IPR008250 -
Rops1g01879 1015 Gene3D - 451 799 IPR023214 -
Rops1g01879 1015 FunFam Calcium-transporting ATPase 464 658 - -
Rops1g01879 1015 Gene3D - 169 1003 - -
Rops1g01879 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 663 IPR023299 GO:0000166
Rops1g01879 1015 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Rops1g01879 1015 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Rops1g01879 1015 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Rops1g01879 1015 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Rops1g01879 1015 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Rops1g01879 1015 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Rops1g01879 1015 NCBIfam calcium-translocating P-type ATPase, PMCA-type 113 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops1g01879 1015 PANTHER CATION TRANSPORTING ATPASE 72 1014 - -
Rops1g01879 1015 Gene3D - 18 78 - -
Rops1g01879 1015 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g01879 1015 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g01879 1015 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g01879 1015 SUPERFAMILY HAD-like 452 859 IPR036412 -
Rops1g01879 1015 SMART Cation_ATPase_N_a_2 115 191 IPR004014 -
Rops1g01879 1015 FunFam Calcium-transporting ATPase 771 1015 - -
Rops1g01879 1015 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Rops1g01879 1015 SFLD p-type atpase 436 806 IPR044492 -
Rops1g01879 1015 Pfam Cation transporter/ATPase, N-terminus 118 186 IPR004014 -
Rops1g01879 1015 FunFam Calcium-transporting ATPase 217 337 - -
Rops1g01879 1015 FunFam Calcium-transporting ATPase 647 799 - -
Rops1g01879 1015 FunFam Calcium-transporting ATPase 18 78 - -
Rops1g01879 1015 Pfam E1-E2 ATPase 237 432 - -
Rops1g01879 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1014 IPR023298 -
Rops1g01879 1015 NCBIfam HAD-IC family P-type ATPase 206 485 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g01879 1015 NCBIfam HAD-IC family P-type ATPase 725 840 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g01879 1015 NCBIfam HAD-IC family P-type ATPase 546 699 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops1g01879 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Rops1g01879 1015 Gene3D - 142 337 - -
Rops1g01879 1015 SFLD Haloacid Dehalogenase 436 806 - -
Rops1g01879 1015 CDD P-type_ATPase_Ca_PMCA-like 143 887 - -
Rops1g01879 1015 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 50 IPR024750 GO:0005516
Rops1g01879 1015 Pfam Cation transport ATPase (P-type) 514 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01879 Rops-Chr1 38436306 38442384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01879 2 1015 Primary Pumps ATPases AT4G37640 82.759 0.0 1728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01879 K01537 - gmx:100792691 1834.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01879 1 38436306 38442384 Rops1g01879 1 38436306 38442384 ECH
Rops1g01879 1 38436306 38442384 Rops2g04436 2 81035683 81041518 PCT