Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01877 ATGGGGAGCTCTGGTACTTCTTTTTCTTTGTCTAGCCTTATGTGTGAAGAAGGTGAAGCTTGCTTCTTTGAAGATGAAGATGAAGATGAAAACACTGGCATGGACTCGATTGATATTAATAACCCATGTTTCGTTTTGGAGGATGAAGAGGAATACATTGAGTATTTGTTCAGACAAGAAACGGGATTTGGATCCCAGATTCATTTTTTGAACTGTGATGATCACTCAAACAGATACTGGTTGAGGAGTGCACGCTTAAATGCCATTGATTGGATTTTCAATACACAAGCAAAATTTGGGTTCAAGGTTCAGACAGCTTATTTATCAATGACTTACTTTGATAGGTTTCTTTCAAAACGATCCATTGATGAATCCAAACCTTGGGCTATTAAATTGTTATCAGTGGCATGTTTATCCCTGGCAGCAAAGATGGAAGAACAAAGAGTGCCCCCTCTATCTGAATATCCAATAGAAGAATATCGCTTTGAGAACAAAGTTATCAAGAACATGGAGCTGTTGATTTTGGGAACATTGGAATGGAAGATGGGATCAGCAACTCCTTTTGCTTATTTGCATTACTTCTTCAGCAAGTTCTGCCCTGAATCCAGACCAGATACAATAATCACAAAAGCCACTGAACATATTGTGGCCATGGTCAAAGATGTTAATTTGATGGAGCAAAAGCCGTCTATAGTTGCCTCGGCTGCCATATTGGCAGCTTTTGATGCTACATTAACAAGAAAGGCCATGGATCTTCGAATAAGCTTAATCTCATCATGGGGAAATATAGAAAGTGGTCATGTATTTTCCTATTACAATCTTATACAAGAAAAGAGGAGAGACAAAGTTAAGACACCTTCCTCGAATTTATTGTCAACACAGTCGAGCTCATCCACGTGTATGCTTGAGAACCCATCTAATACATGTTCTGGAGCTAAGAGAAAACTTACTTATGAGGACAGTGAAAATTGTCTGGGACACAAGCTACATCGGTCTTAG 999 0.3894 MGSSGTSFSLSSLMCEEGEACFFEDEDEDENTGMDSIDINNPCFVLEDEEEYIEYLFRQETGFGSQIHFLNCDDHSNRYWLRSARLNAIDWIFNTQAKFGFKVQTAYLSMTYFDRFLSKRSIDESKPWAIKLLSVACLSLAAKMEEQRVPPLSEYPIEEYRFENKVIKNMELLILGTLEWKMGSATPFAYLHYFFSKFCPESRPDTIITKATEHIVAMVKDVNLMEQKPSIVASAAILAAFDATLTRKAMDLRISLISSWGNIESGHVFSYYNLIQEKRRDKVKTPSSNLLSTQSSSSTCMLENPSNTCSGAKRKLTYEDSENCLGHKLHRS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01877 332 Gene3D - 81 183 - -
Rops1g01877 332 CDD CYCLIN_AtCycD-like_rpt1 84 180 - -
Rops1g01877 332 Pfam Cyclin, N-terminal domain 53 182 IPR006671 -
Rops1g01877 332 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Rops1g01877 332 Gene3D - 184 244 - -
Rops1g01877 332 MobiDBLite consensus disorder prediction 283 304 - -
Rops1g01877 332 MobiDBLite consensus disorder prediction 286 304 - -
Rops1g01877 332 SUPERFAMILY Cyclin-like 40 182 IPR036915 -
Rops1g01877 332 SMART cyclin_7 90 176 IPR013763 -
Rops1g01877 332 PANTHER CYCLINS 46 282 IPR039361 -
Rops1g01877 332 CDD CYCLIN_AtCycD-like_rpt2 186 275 - -
Rops1g01877 332 FunFam Cyclin-D5-1 80 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01877 Rops-Chr1 38422411 38424263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01877 9 265 Core Cell Cycle Gene Families AT4G37630 36.803 6.14e-48 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01877 K18811 - gmx:100798140 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01877 1 38422411 38424263 Rops1g01877 1 38422411 38424263 ECH