Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01875 ATGTCGGAGGTGGTGTCATTGAGAAAAGAGAGTTTCAATCTGCTCTTGCCTTCTTGTCCTCTTGGGCATTCCTTTTTTCCTTCTGGGAAAAAATTATACAGAGAGGAAAGCTTTTCAAGGTTTAAACAAGCAGTGAAGACAATGATGGCTCCTATGGACAGCGATTGTAGCAAACCTCTCCGGAATGTTAAGGATTTCATTCCAGCACCACCTCCTTTGCCCCATTCTGCAGCAACTGGTTGTCCTTGCAAGTGTCTGGTGAGGAATAATTCAGCATCAAAAGAGCACACCAGCTATGTCTATTCAGCAACAAAAGATTTGTGGGAGCGTCTTTTCTATGAAGGTTTTAAAGCAGATGTTTGCATTTATACTGACAATGGTGGCATTGTTTATGCTCATTCTAACATTCTTGCCATGGCTTCTCCTGTAATGAGAGGAATGCTGAAACAAGCAAATCGTCACAATCGATGGCGATCAATCTCAATCTTTGGGGTTCCAGATGATGCAGTACGAGTTTTTATTAGATACTTGTACTCTTCCAGTTATGAGAAAGAAGACATGGAGGAATTCATCCTACCTCTGTTGGTGCTGTCACATGTATACGTGGTTCCTCACTTGAAACGTGAATGTGAAAAGAAGCTAGAATTGGGTTTACTCACCATAGATAATGTGGTTGATGTATTTCAACTTGCATTACTATGTGATGCACCACGGCTCAGCCTCATTTGTCACCGTAAGATACTAAAGAACTTCAAAGCTGTTGCGGAGTCAGAAGGATGGAAAACAATGAAGCAGAGCCACCCAAATCTAGAAAAGGAAATTCTGGAGTCAGTGATTGAAGAAGAAAATATTAAGAAGGAGAGGATCAGAAAAATCAATGAAAGAGAGATCTATCTGCAATTATATGATGCAATGGAAGCTCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGTCCTCATGATAAAGACTTCAAAGCAAACCAACCATGTAAGTATGCAGCATGCAAGGGGCTAGAATTGCTTGTTCGTCACTTTGCTGGCTGTAAGTTGAGAGTCCCAGGAGGCTGTGTTCATTGCAAGAGGATGTGGCAATTATTGGAGCTACACTCTCGACTTTGTGCTGATCCAGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGCGAATATCAAAACAAAGCAAGAAAGATGAAATTAGATGGAAAATATTGGTTGAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCACCATGCTTTCGGCCACAATGA 1281 0.4098 MSEVVSLRKESFNLLLPSCPLGHSFFPSGKKLYREESFSRFKQAVKTMMAPMDSDCSKPLRNVKDFIPAPPPLPHSAATGCPCKCLVRNNSASKEHTSYVYSATKDLWERLFYEGFKADVCIYTDNGGIVYAHSNILAMASPVMRGMLKQANRHNRWRSISIFGVPDDAVRVFIRYLYSSSYEKEDMEEFILPLLVLSHVYVVPHLKRECEKKLELGLLTIDNVVDVFQLALLCDAPRLSLICHRKILKNFKAVAESEGWKTMKQSHPNLEKEILESVIEEENIKKERIRKINEREIYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCKYAACKGLELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDYCRVPLCRNFKQRISKQSKKDEIRWKILVEKILRTRGIGIAPCFRPQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01875 426 SUPERFAMILY TAZ domain 295 395 IPR035898 -
Rops1g01875 426 SMART TAZ_2 295 387 IPR000197 -
Rops1g01875 426 ProSiteProfiles BTB domain profile. 118 186 IPR000210 GO:0005515
Rops1g01875 426 FunFam BTB/POZ and TAZ domain-containing protein 2 220 290 - -
Rops1g01875 426 Gene3D TAZ domain 292 414 IPR035898 -
Rops1g01875 426 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 91 418 IPR044513 -
Rops1g01875 426 Pfam BTB/POZ domain 112 214 IPR000210 GO:0005515
Rops1g01875 426 SMART BTB_4 118 218 IPR000210 GO:0005515
Rops1g01875 426 Pfam TAZ zinc finger 303 386 IPR000197 -
Rops1g01875 426 Gene3D - 219 291 - -
Rops1g01875 426 Gene3D Potassium Channel Kv1.1; Chain A 88 218 IPR011333 -
Rops1g01875 426 FunFam BTB/POZ and TAZ domain-containing protein 2 292 416 - -
Rops1g01875 426 SUPERFAMILY POZ domain 101 214 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01875 Rops-Chr1 38388916 38395039 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Rops1g01875 BTB 1.5e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01875 - - lja:Lj2g3v1968190.1 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01875 1 38388916 38395039 Rops1g01875 1 38388916 38395039 ECH