Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01874 ATGCTCTCAGCACTCGCTTTCTTCTTATACAAGCACAGAGCCAAACACCCCGTAGAGACCCAGAAGCTAGTGGGTCGAAATCCCCAGAGGAACATCGATGATTCAACGGCGCCACCGTCGAGTTTTCTCTACATTGGGACGGTGGAACCTTCTCGAACTTCAACCGTAGTTAACGAGCCAAGAGATGCAGATAAGGCTAATAGGTCACCTTATCACAAGCTCAATTCTATAACGCGATCCGATCGGTACCGTCCAAGTCCTGAGTTACAGCCATTGCCACCGTTAAGTAAACCTCCCGATGGAAACTACCCGCCGGCGGTGTCATCGTCGTCTTCTTCTTCCGATGAGGAAAGTCACGAGACAGCGTTTCATTCGCCGCAAAACTCGTCGTTAAGTCACGATGATGGGTATTACACGCCGGTTTCTCGTCAGAGTTCTCTGGTTAACGGTAGCCCCGTCGTGCCACCGTCCCGGAAAGAGACTCATTCGACACCTTCGATTCCTTTTTCGAAGAGAACTTCTCCAAAATCTCGCCTTTCAGCTTCGTCTCCGGATATAAGACACGTCATCATACCATCTATAAAGCAAACTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCAAAGGAGGATAAACAAGTCACCACCGGAGTTTCCAGGAGGCCAAAGTTCTCAGCGCCGCCACCACCTCCGAATTTGGCGCATCTTCAATCAACAACCAACACAACTTTCCACGTGTCAAGGAATTCACTCAATCCTCCTCCTCCTCCACCACCACCACCTCCTCCACCGCAGCCGAGGAAAAAAGGGTCGCCAGTGGTTGGGGTCTCCTCTTCTTCTGCATCTAGAAAGCAGCAATCTTGGTCTCCAAGTCAAGGGGGTGATTCTGTTGAAAGTGTAACAAAAACTTCAGAGCATGTTGATAAAAGTGTGAGCTCTTCCGAGAGGCTTGAAGCCAATGACACGGATGGAGTTAAACCAAAGTTAAAAGCTTTGCATTGGGATAAAGTTCGTGCGACCTCAGATCGTGCTACTGTGTGGGACCAGTTAAAATCAAGCTCGTTTCAATTAAATGAGGACATGATGGAGTCCTTGTTTGGATGCAATGCCAAGAATTCTGCACCTAAAGAACCTCCAAGAAAACCAGTTCTTCCCTCTGTTGATCGGGAGAACAGGGTGTTAGACCCTAAGAAGTCCCAAAACATAGCTATACTACTGAGGGCACTGAATGTGACAAGAGATGAGGTGTCCGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGTGCTGAGCTGTTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAAAAACTATGATGGTGATCTCTCAAAACTTGGATCTGCAGAAAGATTTCTTAAAACAGTGCTTGATATCCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTATACAGAGCCAACTTTGATTCAGAAGTTAACTACCTTAGGAAGTCTTTTCAAACACTGGAGGCAGCAAGTGAGGAACTAAGGAACAGCCGGTTATTCTTCAAACTCCTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAACGTTGGCACTAATAGAGGTGATGCTAAAGCTTTCAAACTGGACACACTCCTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAGATCATCAGATCTGAAGGTGCAGGAGCTGAATCTGCAAATGAGAATGTTCAGCACCAAATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCTGGGCTCGGTAGGGACCTTAGTAGTGTAAAAAAAGCAGCAGGAATGGACTCAGTTGTCTTAAGCAGCTATGTTTCAAAGCTTGAAATGGGGCTTGAAAAAGTGCGATTGGTGTTGCAATATGAGAAGCCAGACATGCATGGCAATTTCTTTAACTCCACAAAGCTATTTCTGAAATATGCTGAAGATGAAATTGCAAGGATTAAGGCTGATGAGAGAAAGGCCTTATGCCTTGTGAAAGAAGTTACAGAATACTTTCATGGGAATGCAGCAAAGGAAGAAGCCCACCCTTTCAGAATTTTCATGATTGTAAGAGACTTTCTAAATATTTTGGATCTAGTTTGCAAAGAAGTGGGAAGGATGCATGATAGAATTGTTGGTTCTGCCAGATCCTTCCGAATAGCTGCAAATGCATCCTTACCTGTTCTCAACAGGTACCATGCAAGACAGGATAGAAGCTCAGATGAGGAAAGTTCCCCCTAG 2298 0.4565 MLSALAFFLYKHRAKHPVETQKLVGRNPQRNIDDSTAPPSSFLYIGTVEPSRTSTVVNEPRDADKANRSPYHKLNSITRSDRYRPSPELQPLPPLSKPPDGNYPPAVSSSSSSSDEESHETAFHSPQNSSLSHDDGYYTPVSRQSSLVNGSPVVPPSRKETHSTPSIPFSKRTSPKSRLSASSPDIRHVIIPSIKQTPPPPPPPPPPPKEDKQVTTGVSRRPKFSAPPPPPNLAHLQSTTNTTFHVSRNSLNPPPPPPPPPPPPQPRKKGSPVVGVSSSSASRKQQSWSPSQGGDSVESVTKTSEHVDKSVSSSERLEANDTDGVKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNAKNSAPKEPPRKPVLPSVDRENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKTVLDIPFAFKRVEAMLYRANFDSEVNYLRKSFQTLEAASEELRNSRLFFKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANENVQHQMDSKFNEDEFKKQGLQVVAGLGRDLSSVKKAAGMDSVVLSSYVSKLEMGLEKVRLVLQYEKPDMHGNFFNSTKLFLKYAEDEIARIKADERKALCLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLNILDLVCKEVGRMHDRIVGSARSFRIAANASLPVLNRYHARQDRSSDEESSP* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01874 765 Gene3D Formin, FH2 domain 314 727 IPR042201 -
Rops1g01874 765 ProSiteProfiles Formin homology-2 (FH2) domain profile. 319 742 IPR015425 -
Rops1g01874 765 Pfam Formin Homology 2 Domain 322 716 IPR015425 -
Rops1g01874 765 MobiDBLite consensus disorder prediction 250 269 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 24 57 - -
Rops1g01874 765 SMART it6_source 319 731 IPR015425 -
Rops1g01874 765 MobiDBLite consensus disorder prediction 194 211 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 58 79 - -
Rops1g01874 765 PANTHER FORMIN-RELATED 3 760 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Rops1g01874 765 MobiDBLite consensus disorder prediction 272 300 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 87 101 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 20 324 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 235 249 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 301 324 - -
Rops1g01874 765 SUPERFAMILY Formin homology 2 domain (FH2 domain) 254 727 - -
Rops1g01874 765 MobiDBLite consensus disorder prediction 123 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01874 Rops-Chr1 38368040 38372888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01874 277 756 FH2 protein (formin) Gene Family AT5G67470 71.281 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01874 - - gmx:100798670 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01874 1 38368040 38372888 Rops1g01874 1 38368040 38372888 ECH
Rops1g01874 1 38368040 38372888 Rops2g04437 2 81099896 81104785 PCT