Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01867 ATGAGTTGCAACGGGTGCCGTGTCCTTCGAAAGGGTTGCAGTGAGTCATGTATCTTGCGACCTTGTCTACAGTGGATCGATACCCCGGAAGCTCAAGGTCATGCCACTGTTTTTGTGGCCAAATTTTTCGGCCGTGCTGACCTCATGTCCTTCATTTCCAACGTTCCTGAACCCCAAAGACCTGCTCTGTTTCAATCTCTGTTGTTCGAAGCGTGTGGACGAACGGTTAACCCCGTTAACGGTGCCGTGGGTCTTTTGTGGACCGGAAACTGGCACGTGTGCCAGGTGGCGGTTGAGACGGTGCTCCGTGGCGGCACCCTGAGACCCATGCCGGAGCTTCTAGGCCTAGACGCTCCTACTCCCACCGCCGACGATGCCTCCGAAGGGGAAGTTACCTGTACCGACATGTGGAGGGTCCGAGATCCGAACCCGAATTTCCGGTTCATGAGTTCCCGGTCTAATAAGGTTGCTTCCGGCGGTAAACGCAAGCGATCGGAGGAGATTACCAAGCTTCCGGCCACGACTGATCTCAATCTCCGGTTGACACCGAGTTTCCAGCAGAACGTGTCGACCTACGGTTGCCGACGGGAAATTCGCCGGCCGGGATCGCCGTCGATGAATTCAGAGGAATCGGTGACGACGACGGCGTGCTTGGAGAGTGGAATCGGAGATCACTACGCTCACGACGGAGACCGGAAAGTGCTTAACCTTTTCATTTGA 720 0.5569 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQVAVETVLRGGTLRPMPELLGLDAPTPTADDASEGEVTCTDMWRVRDPNPNFRFMSSRSNKVASGGKRKRSEEITKLPATTDLNLRLTPSFQQNVSTYGCRREIRRPGSPSMNSEESVTTTACLESGIGDHYAHDGDRKVLNLFI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01867 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Rops1g01867 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 221 - -
Rops1g01867 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01867 Rops-Chr1 38184342 38185726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01867 1 238 AS2 family AT3G49940 55.078 1.48e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops1g01867 LOB 5.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01867 - - gmx:100816189 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01867 1 38184342 38185726 Rops2g04444 2 81331131 81332314 ECH
Rops1g01867 1 38184342 38185726 Rops1g01867 1 38184342 38185726 ECH
Rops2g04444 2 81331131 81332314 Rops1g01867 1 38184342 38185726 PCT