Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01864 ATGAACAAAAATCAAATTCCTAGGACTAGGCCCTGGCCTGGATTCCCTACATCTAAGACCCTGGATAGCTTCGGCGACGCCAATTGCATGGAACAGTTACTTGTTCACTGTGCTAATGCTATCGAAAGCAACGATGTAACACTTGCCCAACAAATCCTTTGGGTCCTCAACAACATAGCACCCCCAGATGGTGACTCCAATCAGCGCTTAGCATGTAGCTTCCTTAGAGCTCTCACAACACGTGCAGCCAAAACCGGAAGTTGCAAAATGCTTGAAGCCGTGGCAGATGCTCATAGTACCCTAGCTTTACACACCCACAGATTCTCTGTCATTGAGTTAGCCAACTTCGTTGACTTAACCCCTTGGCATCGCTTTGGTTTCACAGCCGCTAATGCTGCCATTCTAGAAGCTACTGAAGGGTTCTCAGTCATCCATATAGTGGATTTGAGTTTGACACATTGCATGCAGATTCCAACTTTGATTGATGCCCTCGCTAGCCGCCACGAGGTGCCCCCTCTAATCAAGCTCACAGTTGCTCATGATACCTGCAGGGACATTCCACCTATGTTGGACCTTTCTTATGACGAATTGGGTGATAAGTTGGTCAATTTCGCTAGGTCAAAGAACGTGATTATGGAATTCAGAGTGGTTTATTCCACTTACAAAGACGGGTTCGCAGCTTTGATCCAACACTTGCGGGTGCAACATATAATGTACGCAGCACAAGGTCATCCAAATGAAGCTTTAGTCATTAACTGTCACATGATGCTTCATTATATCCCAGATGAAACTCTATCTGTAATCGCTGATACTGATTTAAACTCTTATGTTTATGATTCTTCTTCGTCCTTGCGATCAATGTTCCTCAAAGCCCTCCGGAGTTTAGACCCAACCATTGTAGTTTTGGTAGATGAAGATGCTGATTTAACATCAAATAATTTGGTTTGCAGACTGAGGTCTGCGTTTAATTATCTATGGATACCATACGATACAGTGGACACGTTCCTTCCACGAGGCAGTAAACAAAGGCAGTGGTATGAGTCTGATATTTGCTGGAAGATTGAGAATGTGATAGCACATGAAGGGCTTCAGAGGGTTGAGAGGGTTGAGCCTAAAAGCAGGTGGGAGCAACGAATGAGAAATACAAACTTTCATGGGATCAGCTTCAGTGAGGATTCGGTTTCGGAGGTCAAGGCCATGCTTGATGAACATGCAGCTGGATGGGGATTGAAGAAGGAAGATGAGCATCTTGTGCTTACATGGAAAGGGCACAATGTCATCTTTGCCTCTGCTTGGTTACCAGCTTGA 1308 0.4488 MNKNQIPRTRPWPGFPTSKTLDSFGDANCMEQLLVHCANAIESNDVTLAQQILWVLNNIAPPDGDSNQRLACSFLRALTTRAAKTGSCKMLEAVADAHSTLALHTHRFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDALASRHEVPPLIKLTVAHDTCRDIPPMLDLSYDELGDKLVNFARSKNVIMEFRVVYSTYKDGFAALIQHLRVQHIMYAAQGHPNEALVINCHMMLHYIPDETLSVIADTDLNSYVYDSSSSLRSMFLKALRSLDPTIVVLVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYESDICWKIENVIAHEGLQRVERVEPKSRWEQRMRNTNFHGISFSEDSVSEVKAMLDEHAAGWGLKKEDEHLVLTWKGHNVIFASAWLPA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01864 435 ProSiteProfiles GRAS family profile. 21 433 IPR005202 -
Rops1g01864 435 Pfam GRAS domain family 30 432 IPR005202 -
Rops1g01864 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 422 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01864 Rops-Chr1 38121115 38122422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01864 15 434 GRAS Transcription Factor Family AT3G49950 60.613 1.06e-179 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops1g01864 GRAS 2.6e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01864 - - tcc:18611261 712.99