Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01852 ATGGTTTATCTTTCCGGTGCCGGATACAGAAGAGTCGTCGGGATCAATCATCGGAAGCCAATTTCTTTGTTATCAATTCTACCAAACGACACCATTTCAACGCGCTACGTCGTCGTATTTCTTTATCAGAGTTGCAGAGGACATGGCTTTAGTAGTGCTTCTGAATCAGCATGGACAAATTTTCCCATAGAGAACGCGTACGAGCTCTTAGGAGTGTTGGAAACCAGTTCATTTGCTGAGATCAAAGCGTCGTTTCGCAAATTGGCCAAAGAGACTCACCCGGACCTCGCTGAGTCAAGGAACGATTCCACTGCGTCTAAACGATTTGTGCAAATCCTTGCCGCCTATGAGATTCTTTCAGATTCTCAGAAGAGAGCCCACTATGACATGTACCTGTTGGCTCAGAGAAAGCTTATGCAAAAGCATTCTGGACAGGGTTCAAAATTATACATTTACGATTCACAGGTTACTATGTTCAAGGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAAAGATATTTTGTCAGAGAAGAAGGTGGTGGTTGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCAGCATACTATGGTCCAGAAATAGATTCTATGCCCATGGAGCTTCTTCCTGACTGCTTTGAGGCTGAGGAGAGGTCCTCTAATGAAACTCCTGAGGTTTTACACTTGGTTTCAGGCCGTGATCTTTTTGGGATGGTTTGCCTAGTTAACAATATTCCAGAGATATCATCTACCAATAATGAAAAGTTAACTTCTTTTAGATCCTTCCATTCAGGCCTGTGTCAATCTATAACAAATGTGAACATACACGGGAATGCAGAAAGGCCAGATGATTTTGGAACTCATCAAAGTCACAGCTCTAAAATTTCAAGTAATGTATCAGATGCATATAGAGATCAAGAATTACATGTCTCTGGAAGATTGGTTGCTACAGCATCTAGGGTTCTACCTAGATGCTATCCTTGTGCGATGCCAGAAGGAGATGCTGAAGATCACATTCACGTGTTCCTTAATTCAGATGAAGATCCCAGGTATACCAGCAGTGGTGTTTCGAAACATTTCTTTGCAGATAGTGCAGTTGGAAGCAGAATTCATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGACGAAGGATGTTGTTATGTCTACAACAGCAGTGGTGAAAAGACCCATGTGATTATGAAACATAGAACACTGATGGTGAAGCATATGCACTGGTATGAAATGGGTGAGAAAGTTTCAGTTTGTGAGTGTAGATGCACCAGAGCACGTTTGCCTCCAAGCAAGTTTTGGCTATTTGAGCCTCGTTGTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAAGGGTCGTACAATGCCATCACAAAGGTTCTGGGATGGCTTGGATTATAGTGAGCAAGTTGACAGAAGACTTCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGATCTTGAATATGCCAAAGCAAGCAAGAAAACATTCAGGAATGCTATTGGGGCACAAATGTTTCGAATTCTTCACTGGTGCAGGAAACTAGCTCAGTAG 1626 0.4207 MVYLSGAGYRRVVGINHRKPISLLSILPNDTISTRYVVVFLYQSCRGHGFSSASESAWTNFPIENAYELLGVLETSSFAEIKASFRKLAKETHPDLAESRNDSTASKRFVQILAAYEILSDSQKRAHYDMYLLAQRKLMQKHSGQGSKLYIYDSQVTMFKEMEVVEWLKWYRLAIKDILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDSMPMELLPDCFEAEERSSNETPEVLHLVSGRDLFGMVCLVNNIPEISSTNNEKLTSFRSFHSGLCQSITNVNIHGNAERPDDFGTHQSHSSKISSNVSDAYRDQELHVSGRLVATASRVLPRCYPCAMPEGDAEDHIHVFLNSDEDPRYTSSGVSKHFFADSAVGSRIHLGTISGLGSSPDEGCCYVYNSSGEKTHVIMKHRTLMVKHMHWYEMGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGRTMPSQRFWDGLDYSEQVDRRLHPAMYLFALAYRTLDLEYAKASKKTFRNAIGAQMFRILHWCRKLAQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01852 541 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Rops1g01852 541 SMART dnaj_3 64 124 IPR001623 -
Rops1g01852 541 Gene3D DnaJ domain 54 151 IPR036869 -
Rops1g01852 541 Pfam DnaJ domain 65 129 IPR001623 -
Rops1g01852 541 CDD DnaJ 65 121 IPR001623 -
Rops1g01852 541 SUPERFAMILY Chaperone J-domain 62 142 IPR036869 -
Rops1g01852 541 ProSiteProfiles dnaJ domain profile. 65 132 IPR001623 -
Rops1g01852 541 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 31 539 - -
Rops1g01852 541 PRINTS DnaJ domain signature 104 124 IPR001623 -
Rops1g01852 541 PRINTS DnaJ domain signature 85 100 IPR001623 -
Rops1g01852 541 PRINTS DnaJ domain signature 67 85 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01852 Rops-Chr1 37930354 37936190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01852 67 131 C2H2 Transcription Factor Family AT1G74250 41.176 3.42e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01852 - - gmx:100805332 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01852 1 37930354 37936190 Rops1g01852 1 37930354 37936190 ECH