LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g01848	ATGGCGGGTCTGTTCAATGAATCCCATGAATCTATATCGCCTAGAGATGATTTTGGGCACGGCACCCATGTTGCTAGCATAGTTGCAGGGTCTGCTGTAAAGAAAGCGAGCCTATTCGGCTTCGCTTCTGGGACAGCACATGGCATGGCCCCTGCTGCCAGGGTAGCTGTCTACAAGGTTTGCTGGGCTGATAATGTTTGGGGAATTGCTTGTATGGCTTCTGATATACTTTATGCAATGGACCAGGCCATATCTGACAACGTCAATATCCTTTCAGTTTCCATCGGACGAATCCCTGAAGTAGCCTACTATAATGACAGCATCGCAATTGGAGCCTTTGCGGCAATAGAACATGGGATTCTAGTCTCTTTCTCTGCAGAAAACTGGGGTCCCAATCCCTTTACTCTTTCCATGGTACCACCTTGGGTTATCACTGTGGGAGCTAGCACAATCGATCGAAATTTCCCAGCGTATGTTAGCCTAGGAAATGGTCAAAATTATTCCGGAGTTTCCCTTTATAGTGGCAAGGCTTTGCCCCACCGCGTGTCATTCATATACGCAGGGAATGCAAGTAAAGGATTTGGTGCTGCTTTGTGTTTGCCGAATAGCTTGGTGCCAAAAAAGGTGAAAGGAAAGATCGTGCTCTGTGAGAGTGGAAGAATTTATAACGCAGAAAAGGGAGATTCGGTGAAATCCGCTGGCGGTTTGGGCATGGTGGTCAACGTGGACGCCAAGAAAGATGAACTCATGGCAGATGCGCATGTTTTGCCTGCAACTTTTGTGGGCTTCAAAGCCGGGGAAGCTATCAAGAATTATTTATTCTCTGATCCAAAACCAATGGTTACGATTGTGTTTCAGAAAACACAGGTTGGGATTAGGCCGTCACCTGTTGTTGCAGCATTCAGCTCCAGGGGCCCCAATTATGTGACTCCAATGGTGTTGAAGCCTGATTTGATTGCCCCAGGTGTCAATATCTTAGCAGCATACACGAGAAATGCAGGTCCCACTCGCATGAAATCAGATCATAGGCGTGTGAACTTCAACATAATGTCAGGTACTTCCATGGCTTGCCCTCACGTGAGCGGGATAGCGGATCTGATCAAGTCGGCTCATCCAAACTGGAGCCCAGCGGCGATTAGATCTGCATTGATGACCACAGCTTATACCACTTACAAGAATGGTAAACCGTTGCTGGACAGTGCTACCAAAGAAGCAGCGACACCATTTGATCTTGGTGCTGGACATGTGAACCCCGTTCCTACATTAAATCCAGGACTTGTTTATAATTTGAGATTGGTTGATTATCTAAATTTCCTCTGTGCGTTGAACTACACAGCCGATCAGATTGAAGCTGTGGCAAGGAGAAAGTACAATTGCGACCCAGACAAACACTACAGTGTAACAGACTTAAATTATCCTTCATTCGCTGTGGTGTTTGAACCAGTAGCTGGTGGCTATGGTGCAGCGGAGGTTAAACACACTCGAACTCTTACCAATGTGGCGGATGCCGGAACATACAAGGCAATGGTTAAGTCAGATATCCCGTCTATCAAGATCTCAGTTGAGCCCAGAGTGTTGAGTTTCAACAAAAATGAGAAAAGATCATATACTGTTACGTTTAGGTCATCAGGTCCGAAACCGCATTATCCTCATGGGTTTGGACGTATAGAATGGTCTGACGGGAAAAGGCTCCTTGGAAGTCCTATCTCATTTAGTTGGGTATGA	1725	0.4632	MAGLFNESHESISPRDDFGHGTHVASIVAGSAVKKASLFGFASGTAHGMAPAARVAVYKVCWADNVWGIACMASDILYAMDQAISDNVNILSVSIGRIPEVAYYNDSIAIGAFAAIEHGILVSFSAENWGPNPFTLSMVPPWVITVGASTIDRNFPAYVSLGNGQNYSGVSLYSGKALPHRVSFIYAGNASKGFGAALCLPNSLVPKKVKGKIVLCESGRIYNAEKGDSVKSAGGLGMVVNVDAKKDELMADAHVLPATFVGFKAGEAIKNYLFSDPKPMVTIVFQKTQVGIRPSPVVAAFSSRGPNYVTPMVLKPDLIAPGVNILAAYTRNAGPTRMKSDHRRVNFNIMSGTSMACPHVSGIADLIKSAHPNWSPAAIRSALMTTAYTTYKNGKPLLDSATKEAATPFDLGAGHVNPVPTLNPGLVYNLRLVDYLNFLCALNYTADQIEAVARRKYNCDPDKHYSVTDLNYPSFAVVFEPVAGGYGAAEVKHTRTLTNVADAGTYKAMVKSDIPSIKISVEPRVLSFNKNEKRSYTVTFRSSGPKPHYPHGFGRIEWSDGKRLLGSPISFSWV*	575

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g01848	574	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	20	30	IPR022398	-
	Rops1g01848	574	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	422	-	-
	Rops1g01848	574	Pfam	Subtilase family	8	395	IPR000209	GO:0006508\|GO:0008236
	Rops1g01848	574	Pfam	Fibronectin type-III domain	469	570	IPR041469	-
	Rops1g01848	574	ProSitePatterns	Serine proteases, subtilase family, serine active site.	352	362	IPR023828	-
	Rops1g01848	574	SUPERFAMILY	Subtilisin-like	13	426	IPR036852	GO:0004252\|GO:0006508
	Rops1g01848	574	Gene3D	Peptidase S8/S53 domain	9	435	IPR036852	GO:0004252\|GO:0006508
	Rops1g01848	574	PRINTS	Subtilisin serine protease family (S8) signature	16	29	IPR015500	-
	Rops1g01848	574	PRINTS	Subtilisin serine protease family (S8) signature	351	367	IPR015500	-
	Rops1g01848	574	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	9	569	IPR045051	-
	Rops1g01848	574	FunFam	subtilisin-like protease SBT1.5	152	290	-	-
	Rops1g01848	574	Pfam	PA domain	189	269	IPR003137	-
	Rops1g01848	574	Gene3D	-	152	291	-	-
	Rops1g01848	574	SUPERFAMILY	PA domain	206	272	IPR046450	-
	Rops1g01848	574	CDD	PA_subtilisin_like	158	283	-	-
	Rops1g01848	574	Gene3D	-	439	573	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g01848	Rops-Chr1	37838621	37840345	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g01848	3	574	Subtilisin-like Serine Gene Family	AT5G67360	61.043	0.0	687

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g01848	-		-	gmx:100801866	733.021