Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01845 ATGTTGGAGTTATGCCGCAGACCATTGACGATGTGCTTTGGTGGTGGAGGCAACGATGATAGGCTCATGTGGCACATGGACTTGAAGTCTCATGCTTCAGGGGACTATTCAATTGCAGTGGTACAAGCTAATTCGTCTTTGGAAGATCAAGGACAAGTGTTGATATCTCCCTCCGCAACTTTTGTTGGTGTATACGATGGCCATGGTGGACCTGAAGCTTCACGTTTCATCACTAACCATCTCTTCCCCTTTCTTCACAAGTTTGCTTCAGAGGAAGGTGGTTTGTCAGAGCAAGTGATAAAGAAAGCCTTTGAAGCAACCGAAAAGGAGTTTTTGCATTTGGTGAAAGAATCTTGGATTGCACGGCCACATATTGCTTCAGTGGGATCGTGTTGTCTCCTAGGAGTGATTTCAAACGATGTTCTTTATGTGGCTAATCTCGGGGATTCGAGGGCTGTTCTGGGTCGGAAAGTATTGGGAGGACAGGTAAACTGTGCTTCTGTGGTTGCAGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAAGAGGTTAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGCACATATTGTGGTTTGTGCTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTCTCAAGATCAATTGGAGATGTTTACCTAAAGAAACCAGAGTTTGACAATGATCCTCTGTTCCGACAATTTGTATGTCCAGTATCTTTGAAGAGACCTGTAATGACAGCAGAACCATCAATATTGACGAGGAAGTTAAAAGCAGAAGATTTGTTTTTGATCTTTGCATCAGATGGACTTTGGGAACATTTAACTGATGAAGCAGCTGTTGAAATCGTCTTCAGAAGTCCAAGAATAGGAATAGCAAAACGATTGGTGAGAGCTGCAATGGAAGAGGCTGCAAAGAAAAGAGAAATGAGATATCAGGATTTAAAGAGAATTGAGAAAGGTCTGAGGCGCCATTTTCATGATGATATTACAGTGATAGTTATATACCTTGATCATTCACAAGGTTCTCCGAATGGAAGTAGGTCAAGACATGATTGCATTGGTACTCCTGTTGATATCGTTTCTCTGAAAGCGGATGAAGCTAACTTGTAA 1119 0.4281 MLELCRRPLTMCFGGGGNDDRLMWHMDLKSHASGDYSIAVVQANSSLEDQGQVLISPSATFVGVYDGHGGPEASRFITNHLFPFLHKFASEEGGLSEQVIKKAFEATEKEFLHLVKESWIARPHIASVGSCCLLGVISNDVLYVANLGDSRAVLGRKVLGGQVNCASVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCARGVWRIKGIIQVSRSIGDVYLKKPEFDNDPLFRQFVCPVSLKRPVMTAEPSILTRKLKAEDLFLIFASDGLWEHLTDEAAVEIVFRSPRIGIAKRLVRAAMEEAAKKREMRYQDLKRIEKGLRRHFHDDITVIVIYLDHSQGSPNGSRSRHDCIGTPVDIVSLKADEANL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01845 372 PANTHER PROTEIN PHOSPHATASE 36 338 IPR015655 GO:0004722|GO:0006470
Rops1g01845 372 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Rops1g01845 372 CDD PP2Cc 42 339 IPR001932 -
Rops1g01845 372 Pfam Protein phosphatase 2C 56 308 IPR001932 -
Rops1g01845 372 FunFam Probable protein phosphatase 2C 42 26 347 - -
Rops1g01845 372 SUPERFAMILY PP2C-like 41 340 IPR036457 -
Rops1g01845 372 SMART PP2C_4 27 337 IPR001932 -
Rops1g01845 372 Gene3D - 23 345 IPR036457 -
Rops1g01845 372 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01845 Rops-Chr1 37724824 37728156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01845 17 345 PP2C-type Phosphatase Gene Family AT3G51370 54.599 4.11e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01845 - K01102 gmx:100802394 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01845 1 37724824 37728156 Rops1g01845 1 37724824 37728156 ECH