Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01838 ATGTCACAACAACAACCTCTGTTAGAGGATTTCCGTCAAGACCAAGAAGAAACTGCTTATGATTCATCCGAGAAGGTTGTCGTCGTCGGAATCGACGAATACGAGGGTGACGTGGATAAAGCGCCACCGTTCTCATGGAAGAAACTGTGGTTGTTCAGTGGTCCTGGTTTTCTGATGAGCATCGCGTTCCTGGATCCTGGGAACTTGGAAGGAGATCTTCAATCTGGTGCCATTGCTGGGTACTCACTGTTATGGCTTCTCATGTGGGCTACGGCTATGGGACTTCTTATTCAGCTTTTGTCAGCACGGTTAGGAGTGGCCACTGGAAAGCACTTGGCTGAACTGTGCAGAGATGAGTACCCTACATGGGCTAGGATTGTGCTTTGGTTGATGACTGAGGTTGCTCTTATTGGCTCTGATATACAAGAGGTTATTGGGAGTGCTATTGCTATCAGGATTCTAAGTAATGGTACTGTGCCCCTTTGGGCTGGGGTTGTCATTACTGCTTTAGATTGTTTTGTTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTGATTGGTATCATGGCTCTCTCATTTGCGTGGATGTTTGGTGAAGCAAAGCCCAATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAATTAAGCTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGTTGTATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGGCATATTGACCACAACAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTACTACTCTATAGAATCCACCATCGCCCTTGTAGTCTCCTTTATCATTAATATATTTGTCACAACTGTGTTTGCCAAGGGCTTCTATGGTACTGAAATAGCAAATAGGATTGGTCTTGTGAATGCAGGGCAGTACCTTCAGGAGAAGTATGGGGGTGGACTATTTCCAATCCTATATATATGGGGTATTGGATTATTAGCAGCTGGCCAAAGTAGCACTATTACTGGTACATATGCTGGACAATTTATTATGGCAGGTTTTCTGAATTTAAGGTTGAAAAAATGGATGAGGGCATTAATCACACGGAGTTTTGCAATCATCCCAACCATGATAGTTGCTCTTATATTTGATACCTCGGAAAAATCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCCTTTGCACTGATTCCCTTGCTTTGTTTGGTATCGAAGGAACAGGTAGTGGGCAGTTTCAGAATTGGCCCTGTCCTCAAGATTATTTCCTGGCTTGTGGCTGTGCTGGTGATATTGATAAATGGCTATCTTTTGCTTGAATTCTTCTCTTCTGAAGTGAATGGAGCAGCGTCCACCACTATAGTGTGCATAATAACAGCTGCATATGTTGCATTTATACTTTACCTTATTGCACGGGCCATCACCTTTTCACCTTGGCAAAGTTTAACTCGATCCAAGACAGTTGCCAGCACAGGGAATTGA 1527 0.4276 MSQQQPLLEDFRQDQEETAYDSSEKVVVVGIDEYEGDVDKAPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGTVPLWAGVVITALDCFVFLFLENYGVRKLEAFFAVLIGIMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRHIDHNKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMAGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEKSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQVVGSFRIGPVLKIISWLVAVLVILINGYLLLEFFSSEVNGAASTTIVCIITAAYVAFILYLIARAITFSPWQSLTRSKTVASTGN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01838 508 Hamap Divalent metal cation transporter MntH [mntH]. 35 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 Pfam Natural resistance-associated macrophage protein 70 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 183 204 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 128 154 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 401 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PRINTS Natural resistance-associated macrophage protein signature 158 177 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 NCBIfam Nramp family divalent metal transporter 54 423 - -
Rops1g01838 508 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 47 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops1g01838 508 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 41 488 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01838 Rops-Chr1 37655887 37659258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01838 32 494 Inorganic Solute Cotransporters AT2G23150 81.023 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01838 K21398 - gmx:100807811 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01838 1 37655887 37659258 Rops1g01838 1 37655887 37659258 ECH