Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01828 ATGGACAACATAACAAAGCCAGCAGTTCTCCCCAATCCAGTTATATTGCAGAGTGAGAGCTTACTAAAGTATATACTGGAGACCAGCGTTTACCCAAGAGAACCAGAGACTCTCAAAGAGCTTAGGAATGCCACTGCAAGCCATCCTATGTGGTTTGATTTTAGTGGGTACCATAAGAAGTTACAAAGGCTTGGGGAAAAGATAGATGCGCTCTTCCAAGGACTCATCGATGAGCATCGTAATAAGAAGGAAAGTTCAAATACCATGATAGATCATTTACTTTCCTTACAAGAGTCACAACATGAGTATTACACTGACCAAATCATCAAAGGGCTCATTATGGCGCTGATAGTGGCTGGGACAGATACTTCAGCAATAACATTAGAGTGGGCGATGACGAATCTGTTAAATCATCCAGAGGTGTTGGAGAAAGCAAGGATTGAGTTAGACACTAAAGTTGGAGAGGAATGCCTTATGGAGGAAGAGGAAGTTGCAAAATTATCGTACCTTAAGAGCATAATCTCAGAGACATTGCGATTGCATCCACCAGCGCCATTACTGCTGCCACATTTCTCCTCTGATGACTGCACTGTAGGAGGTTATGACGTGCCACGCAACACCCTGTTGATGGTGAATGTGTGGGCCATTCATAGGGACCCAGAGTTATGGGCTGACCCAACAAGCTTTAGGCCTGAGAGGTTTGAGAATGGTCAAGAGGACACGCGTTTCCTTATTCCTTTTGGGCTTGGGAGGAGGGCTTGTCCTGGGTCGGGCTTGGCCCAAAGAACTGTAGGCTTGACTTTGGGCTCGCTGATTCAATGCTTTGAGTGGAAAAGGGTTGGCAGTGAAGAAATTGACATGACAGAAGGTCGTGGAACTCTATTACCAAAGGCCATTCCTTTGGAGGCCCAATGCAAAGCGCGTCCAATTATCAGCAAGATTTTCTGA 948 0.4546 MDNITKPAVLPNPVILQSESLLKYILETSVYPREPETLKELRNATASHPMWFDFSGYHKKLQRLGEKIDALFQGLIDEHRNKKESSNTMIDHLLSLQESQHEYYTDQIIKGLIMALIVAGTDTSAITLEWAMTNLLNHPEVLEKARIELDTKVGEECLMEEEEVAKLSYLKSIISETLRLHPPAPLLLPHFSSDDCTVGGYDVPRNTLLMVNVWAIHRDPELWADPTSFRPERFENGQEDTRFLIPFGLGRRACPGSGLAQRTVGLTLGSLIQCFEWKRVGSEEIDMTEGRGTLLPKAIPLEAQCKARPIISKIF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01828 315 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 247 256 IPR017972 GO:0005506|GO:0016705
Rops1g01828 315 PRINTS P450 superfamily signature 119 136 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS P450 superfamily signature 245 254 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS P450 superfamily signature 254 265 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS P450 superfamily signature 172 183 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PANTHER CYTOCHROME P450 82C3-RELATED 50 308 - -
Rops1g01828 315 Pfam Cytochrome P450 50 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 SUPERFAMILY Cytochrome P450 49 308 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 FunFam Cytochrome P450 81D1 89 311 - -
Rops1g01828 315 Gene3D Cytochrome P450 17 309 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS E-class P450 group I signature 244 254 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS E-class P450 group I signature 212 236 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS E-class P450 group I signature 254 277 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS E-class P450 group I signature 108 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS E-class P450 group I signature 171 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01828 315 PRINTS E-class P450 group I signature 128 154 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01828 Rops-Chr1 37518638 37521313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01828 43 315 Cytochrome P450 AT5G36220 60.806 4.41e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01828 K13260 - gmx:100804509 418.698