Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01827 ATGGACGACAACCTTGTTTACATCCTTATCCTCTTCCTTTTTGTTATCACTTCAAAGTTTTTATTGTCCAGAAAAAGATTCAAAAACCTTCCACCAAGCCCACCTTCTCTTCCGATAATTGGCAACCTCTATCAGCTGAAACCACCAATTCACCGAACCTTTCACGCTCTATCGCAGAAATATGGTCATATTTATACCCTCCGATTCGGGTCTCAACCCGTGGTCGTCGTTTCATCTGCATCCGCTGCTGAAGAATGTTTCACCAAAAACGACATCATTTTGGCGAATCGTTTTCACTCTATCAAGACCAAGTATCTTGGCTTTAACAATACCATGATCATAACATCATCGTATGGCGACCACTGGCGGAACTTACGTCGTATCAGCTCACTTGAGATCCTCTCCACTCACCGTCTCAATTCCTTTTTGGGAATCCGAAAAGATGAGACCAAAATATTGCTTCAAAAGCTAGCCAGGGTCTCTCATAATAAAGGCTTCACAAAAGTTGAACTTAGGTCCTTGTTTTCGGAGTTAACTTTCAACACCATCATGAGAATGGTCTGTGGTAAACGCTACTACGGTGAGGAATCTGATGGGACCAGCGCTGAGGAGGCCAAGAGGTTTCGAGCAGTCATGGATGAGATGGCAGAGTTTGGATTGGGGTCCAACCTTGGTGATTTTGTGCCAGTATTTAGGTGGTTTGATTTTAGTGGGGACCACAAGAAGTTACGAAGGCTTGCGGAAAAGATGGATGCGCTCTTCCAAGGACTCATCGATGAGCATCGTGATAAGAAGGAAAGTTCAAATACCATGATAGATCATTTACTTTCCTTACAAGAGTCACAACATGAGTATTACACTGACCAAATTATCAAAGGGCTCATTATGGCGTTGATTGTAGCTGGGACAGAAACTTCAGCTATAACATTAGAGTGGGCGATGGCGAATCTGTTAAACCATCCAGAGGTATTGAAGAAAGCAAGGATTGAGTTGGACACTAAAGTTGGAGATGAATGCCTTATGGAGGAAGAGGAAGTTACAAAATTACCGTACCTTAAGAGCATAATCTCAGAGACATTGCGATTGCATCCACCGGCACCATTGTTGCTTCCACATTTCTCCTCTGATGACTGCACTGTAGGAGGTTATGACGTGCCGCGCAACACCATGTTGATGGTGAATGCGTGGGCCATTCACAGGGACCCGGAGTTATGGGCTGACCCAACGAGCTTTAGGCCTGAGAGGTTTGAGAATGGTCAAGAGGACACACGTTTCCTTATTCCTTTTGGGCTTGGGAGGAGGGCATGTCCTGGGTCGGGCTTGGCCCAAAGAACTATAGGCTTGACTTTGGGCTCACTGATTCAATGCTTTGAGTGGAAAAGGATTGGCAAGGAAGAAATTGACATGACAGAAGGTCGTGGAACTCTGGTGCCAAAGGCCATTCCTTTGGAGGCCCAATGCAAAGCGAGTCCAATTATTAGCAAGATTTTCTGA 1494 0.4491 MDDNLVYILILFLFVITSKFLLSRKRFKNLPPSPPSLPIIGNLYQLKPPIHRTFHALSQKYGHIYTLRFGSQPVVVVSSASAAEECFTKNDIILANRFHSIKTKYLGFNNTMIITSSYGDHWRNLRRISSLEILSTHRLNSFLGIRKDETKILLQKLARVSHNKGFTKVELRSLFSELTFNTIMRMVCGKRYYGEESDGTSAEEAKRFRAVMDEMAEFGLGSNLGDFVPVFRWFDFSGDHKKLRRLAEKMDALFQGLIDEHRDKKESSNTMIDHLLSLQESQHEYYTDQIIKGLIMALIVAGTETSAITLEWAMANLLNHPEVLKKARIELDTKVGDECLMEEEEVTKLPYLKSIISETLRLHPPAPLLLPHFSSDDCTVGGYDVPRNTMLMVNAWAIHRDPELWADPTSFRPERFENGQEDTRFLIPFGLGRRACPGSGLAQRTIGLTLGSLIQCFEWKRIGKEEIDMTEGRGTLVPKAIPLEAQCKASPIISKIF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01827 497 CDD CYP81 62 483 - -
Rops1g01827 497 PANTHER CYTOCHROME P450 82C3-RELATED 10 488 - -
Rops1g01827 497 SUPERFAMILY Cytochrome P450 31 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 FunFam Cytochrome P450 family protein 21 493 - -
Rops1g01827 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Rops1g01827 497 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 Pfam Cytochrome P450 31 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 Gene3D Cytochrome P450 23 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g01827 497 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01827 Rops-Chr1 37518474 37534501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01827 8 497 Cytochrome P450 AT4G37340 56.513 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01827 K13260 - gmx:100804509 728.013