Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01816 ATGGAACCAGCATCTGCTGATTCTTCATCTCAACCTACTCCTTCAGTGTCTAATACTGAACAAAACTCCGCCAAAGTATCATCTCAAATTGGCAGTTCAAATGATTCACCATCATTGTCACCCACTGCTGGGATATCTTCCTGGGCAAGGAATTTGAAATTCCCACAGTCCCTTGGCCTTGGGGCATCACAACAGAACTCACAGACTGAAAATAATGGCATGTCAGCTTTTGCTCGTTTGACTGGTGGGCTTGGATTACGAATGCCTTCCTCAAATGAGACTGCTCCACCTGCCAATGTAGGAGCTGAGCAATCTAATTTAATTGAATCGTTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGTGATGCAGACCAAAGCACGCCATATTGTCTCTCAAAATAAACGCAGATACCAGGAAGATGGATTTGATTTAGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCAGGTGGTGATTTTAGCTCTGGAATCTTTGGATACATTGAGGGTTTCTATCGCAATCACATGGAAGAAGTAATCAAGTTTTTTGAATCTCATCATAAGGGAAAGTATAAAGTATACAATCTTTGTTCAGAGAGGTTGTATGATGGATCGCTTTTCCAGGGAAAGGTTGCAAGTTTCCCATTCAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACAGGACTGATGATTTGTAGTCTTCTTTTGTTTCTTAAGTTCTTCCCCACTGCAGAGGAAGCCATTGATTACTATAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTCAAATACTTGGAACAGACTTTAACACACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACAGTATCTAATCATAGTGGAATTCTTTTCACAACGAGAAGGCATCCTAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACGAAAGAAAGGAATTGTGGTCTTTGCATTACCTGGGGAGCCTGGTCTGACAGAGTTGGTTGGAGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGACTGAAAACAGAAAAATTTTAGATGGCTCGGATCTTGATGGTTTTGACAAGAGAAAGATCCCTGCACCAGGGTTCCAGGTCGAAGTTGTGATGATAGACTATAATGGCACGCTACCCACAAGGACAAAAGCCAATCCTGCAAGCAAAGGATCTGATGGCAACACAAGCAATGTCCAAGCTGGTGCAAGGACTACATCTAATTCAAGTGAGAGTAAGGTCCCTCGAAATGGAGATGATGATGTATTCTCAGATAGTGACGAAGAGGAGACCAAGGGAACACAGAGGGAAGCTGCAACTGAGTACAAATTTGTGGCACCTCATCAAGCATCTGAGGTCACTACAGACCATGTAGGGATGTTGGCACATAAAACGGATCAGTTGTCACTCCAGCATGAGGACCGTACTCAAGACAAGGCTTCTAAAGAATCAACTACAGATAAACCTCATGAAATTCGTGCAGGCCCGAACACCACTAACATGGAATCTGTAGTGGGTAGTGAAATCAAGGCAATTGCAGCTGATGCTTCTGTTTTTTCTTTTGGAGACGAAGATTTCGAGAGTGATGGAGAGAATGCAGGATGA 1836 0.4221 MEPASADSSSQPTPSVSNTEQNSAKVSSQIGSSNDSPSLSPTAGISSWARNLKFPQSLGLGASQQNSQTENNGMSAFARLTGGLGLRMPSSNETAPPANVGAEQSNLIESFTKGLVDSSKSAVKVMQTKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYLEQTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITVSNHSGILFTTRRHPKTKDLMPEDFWISARKKGIVVFALPGEPGLTELVGDFKIHFHDRQGDFYCWMNTTMTENRKILDGSDLDGFDKRKIPAPGFQVEVVMIDYNGTLPTRTKANPASKGSDGNTSNVQAGARTTSNSSESKVPRNGDDDVFSDSDEEETKGTQREAATEYKFVAPHQASEVTTDHVGMLAHKTDQLSLQHEDRTQDKASKESTTDKPHEIRAGPNTTNMESVVGSEIKAIAADASVFSFGDEDFESDGENAG* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01816 611 MobiDBLite consensus disorder prediction 459 490 - -
Rops1g01816 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 319 IPR029021 -
Rops1g01816 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Rops1g01816 611 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 124 321 - -
Rops1g01816 611 MobiDBLite consensus disorder prediction 543 579 - -
Rops1g01816 611 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Rops1g01816 611 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Rops1g01816 611 MobiDBLite consensus disorder prediction 1 44 - -
Rops1g01816 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 253 292 IPR000387 GO:0016311|GO:0016791
Rops1g01816 611 SMART PTEN_C2_2 323 451 IPR014020 -
Rops1g01816 611 MobiDBLite consensus disorder prediction 459 528 - -
Rops1g01816 611 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 116 565 - -
Rops1g01816 611 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Rops1g01816 611 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Rops1g01816 611 MobiDBLite consensus disorder prediction 544 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01816 Rops-Chr1 37375952 37382262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01816 33 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.458 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01816 K01110 - gmx:100801622 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01816 1 37375952 37382262 Rops1g01816 1 37375952 37382262 ECH
Rops1g01816 1 37375952 37382262 Rops6g03154 6 55046279 55064341 PCT