Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01810 ATGGCCGTGGAGCACATGATGGGTTACAGGAATGACAATTTTGTTGCCAAAGCTGAAGAGAATGCAGTTCAAGAAGCTGCTTCTGGGTTAGAGAGTGTGGAGAAGCTCATCAAGTTGCTATCACAGACTCAGCAACAGTATCAGTCTTCTTCAACTTCTTCCATGGAAATTGAGATGGATTATAAAACTGTAGCTGATGTCGCTGTTTCCAAGTTTAAGAAAGTGATTTCACTTCTGGGTCGAACCAGAACAGGTCATGCTCGTTTCAGAAGAGCCCCTTTGGTTCCTCCGGTTAACCAAAACCCTGAAATACAACCACCTTCGGAAACTAGAGTCTATCATGCTACTCCGTTGCAGCAGATCCCACCACCAACGCTTCTTCACCCTTTGATCCCCAAAAATGGGGTGATTGAGAGGAAGGATTCATCTAAGACCATTAATTTCTCTTATTCCTCTGCTGCTAATTCATTCATGTCGTCACTCACCGGTGAAACTGACACTAAACATCCGTGCTCGTCGTCGCCGGCGACGGCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCTGGGAAGCCTCCTCTTTTTTCGTCTTCTTTGAAGAGGAAGTGTAGCTCTGAGAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCTAGCCGCTGCCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAGAGAGTGGTGAGGGTACCAGCAATAAGCTTGAAGATGTCTGATATTCCACCTGATGATTATTCTTGGAGGAAGTATGGACAGAAACCCATTAAAGGATCCCCTCATCCAAGGGGTTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCACGCAAACATGTAGAACGGGCTTTGGATGACCCATCTATGCTTGTAGTCACCTATGAAGGAGAGCACAATCATACCCTCTCTACGGCTGAACCTACTACTAATCTCATCTTAGAATCCTCTTAA 969 0.4561 MAVEHMMGYRNDNFVAKAEENAVQEAASGLESVEKLIKLLSQTQQQYQSSSTSSMEIEMDYKTVADVAVSKFKKVISLLGRTRTGHARFRRAPLVPPVNQNPEIQPPSETRVYHATPLQQIPPPTLLHPLIPKNGVIERKDSSKTINFSYSSAANSFMSSLTGETDTKHPCSSSPATAFQITNLSQVSSAGKPPLFSSSLKRKCSSENLGSAKCGSSSSRCHCSKKRKMRLKRVVRVPAISLKMSDIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSTAEPTTNLILESS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01810 322 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g01810 322 Gene3D WRKY domain 236 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops1g01810 322 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g01810 322 FunFam WRKY transcription factor 65 232 309 - -
Rops1g01810 322 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 312 IPR044810 GO:0003700
Rops1g01810 322 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops1g01810 322 SUPERFAMILY WRKY DNA-binding domain 246 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops1g01810 322 Pfam Plant zinc cluster domain 201 246 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01810 Rops-Chr1 37319177 37321453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01810 19 312 WRKY Transcription Factor Family AT2G24570 44.304 3.08e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops1g01810 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01810 - - gmx:100804089 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01810 1 37319177 37321453 Rops1g01810 1 37319177 37321453 ECH
Rops1g01810 1 37319177 37321453 Rops2g05222 2 93156876 93158433 PCT