Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01805 ATGAAGATTCACTCTCTCTCTCTCTTTGATTTCGACTTGACACATACGTACAACGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAATTGAGAGAGAGAGAGAAACAAAGAAGAAGAACATGGAGGGTGAAGAAGGAGGAAGAGGAAGAGAAGAGAGAGAGATGGGTACGAGGAAGAGAGGTTTGGAAGGTGAGAGAAGATACAAAGGAATAAGGATGAGAAAGTGGGGGAAGTGGGTAGCTGAGATTAGAGAACCAAACAAACGTTCAAGGATTTGGCTTGGTTCTTATTCTACTCCTGTCGCCGCCGCCAGGGCCTATGACACCGCCGTGTTCTATCTCCGGGGACCTTCTGCTCGTCTTAACTTCCCGGAGCTTCTGGCCGTAGAAGGCGCCGCCGTTGTTGGCGGTTGTGACATGTCGGCTGCTTCTATAAGGAAGAAAGCTACTGAGGTGGGTGCTAGAGTTGATGCTCTTCAGGCGACCCTTCATCACCACCACCGTGTGGCGCCGCCGGCGGAGCTACTCTCGGGTGGTGTAGGCGGTGGCTCCGGGGAATTTGCGGTGCGGGTTGACTTGAATAAGATACCGGAGCCTGAGAGTTCGGATTGTGACTGGGATGTGAATTGA 627 0.5088 MKIHSLSLFDFDLTHTYNEEEEEEEEERIERERETKKKNMEGEEGGRGREEREMGTRKRGLEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAVEGAAVVGGCDMSAASIRKKATEVGARVDALQATLHHHHRVAPPAELLSGGVGGGSGEFAVRVDLNKIPEPESSDCDWDVN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01805 208 MobiDBLite consensus disorder prediction 29 60 - -
Rops1g01805 208 CDD AP2 66 125 IPR001471 GO:0003700|GO:0006355
Rops1g01805 208 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Rops1g01805 208 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Rops1g01805 208 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Rops1g01805 208 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Rops1g01805 208 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Rops1g01805 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 50 202 - -
Rops1g01805 208 Coils Coil 17 39 - -
Rops1g01805 208 MobiDBLite consensus disorder prediction 17 60 - -
Rops1g01805 208 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Rops1g01805 208 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Rops1g01805 208 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01805 Rops-Chr1 37270432 37271410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01805 54 206 AP2-EREBP Transcription Factor Family AT2G23340 64.331 7.75e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops1g01805 AP2 1.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01805 K09286 - gmx:100783682 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01805 1 37270432 37271410 Rops1g01805 1 37270432 37271410 ECH
Rops1g01805 1 37270432 37271410 Rops2g04506 2 82315463 82316192 PCT