Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01802 ATGTGGGATCTGAATGACTCACCCGATCAGAGAAAGGACTATGAATCAGAAGGGTGTTCTTCTCTCAAGACTTCAATCGATGGAGATGATGATAAAGGCAAGAGGGTTGGATCTGTTTCCAATTCAAGCTCTTCTGCGGTGGTCATCGAGGATGGATCGGAAGAAGAAGAAGAAGAAAACGAAAGGGGTGGCAGTGAAACGTTGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCAGTTACCCATGATGATAGTGACCACCCACCCGTTACCCGACAGTTTTTTCCGGTGGAGGAGGAGTCGGAGATGGTCATCCCCTCCGGTGGTGGTGGTGGAAGCTCTACCTTACCTAGAGCTCACTGGGTAGGTGTTAAATTTTGTCAATCAGAAGCACTTGGTGCTGGAAAATCAGTGCAAGTTTCACAGCCCATGAAGAAGAGTAGGCGAGGACCAAGGTCTAGGAGCTCACAATATAGGGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATTTGGGATTGTGGAAAACAAGTTTATCTCGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTAGAGGCAGACATAAACTTCAGCTTAGAAGACTATGAAGAGGACTTGAAGCAGATGAGCAATCTAACCAAGGAAGAGTTTGTGCATGTACTTCGCCGACAAAGCACTGGATTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTAGAATGGGCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTATTTGACACCGAGACTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGACCCCAGCATCTATGAGAATGAGCTTAATTCTGAATCCTCAGGTAAAGCTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCAAGCTCTAAACATAGCAATAATCAAACATTGGGGAATCACACTCCTAATGCCGCAACTGATCAGCATATGCCACCTGAATCTAATTGGAGGAATGGGGGAAGCAAGCCTAAGCTGGTGAATATATTACCAAAACCATGTAGTAGAAGCAACATTGAAGCCTGTGTAAGAGATGTGCACGGGGAGAGTGAAGCCTTGAGGCTGTTAAGCCAAACTCACCTTCAATCTCCAGCCACTAATGAAATGCATAGATATGGTCCTTACAGGTCACATGGGGAGCCTCAAATGCTTCACAATTTTGCACATCTTCACCCACCAAATTTTCATCAGCTTCCTAGCAGCAGCAATGGAGGCCGAATTGGAAGTGACCTTTCATTATCAATGTCCGATCAACAACAGTGGCAACCTGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCGCCACAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACGCTCTTATGAGACCCTCCTGA 1524 0.4587 MWDLNDSPDQRKDYESEGCSSLKTSIDGDDDKGKRVGSVSNSSSSAVVIEDGSEEEEEENERGGSETLKKRSSKIFGFSVTHDDSDHPPVTRQFFPVEEESEMVIPSGGGGGSSTLPRAHWVGVKFCQSEALGAGKSVQVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTETEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGKAADHNLDLSLGNSSSKHSNNQTLGNHTPNAATDQHMPPESNWRNGGSKPKLVNILPKPCSRSNIEACVRDVHGESEALRLLSQTHLQSPATNEMHRYGPYRSHGEPQMLHNFAHLHPPNFHQLPSSSNGGRIGSDLSLSMSDQQQWQPGPPHLLATAAASSGFPPQIRPSQGWLQKNGFHALMRPS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01802 507 SUPERFAMILY DNA-binding domain 248 308 IPR016177 GO:0003677
Rops1g01802 507 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Rops1g01802 507 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Rops1g01802 507 MobiDBLite consensus disorder prediction 316 372 - -
Rops1g01802 507 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Rops1g01802 507 MobiDBLite consensus disorder prediction 316 362 - -
Rops1g01802 507 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 Pfam AP2 domain 248 297 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Rops1g01802 507 MobiDBLite consensus disorder prediction 137 158 - -
Rops1g01802 507 MobiDBLite consensus disorder prediction 1 36 - -
Rops1g01802 507 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 405 - -
Rops1g01802 507 MobiDBLite consensus disorder prediction 1 70 - -
Rops1g01802 507 CDD AP2 157 212 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Rops1g01802 507 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Rops1g01802 507 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01802 Rops-Chr1 37212811 37216297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01802 1 351 AP2-EREBP Transcription Factor Family AT4G36920 64.962 3.41e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops1g01802 AP2 7.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01802 K09284 - gmx:100786333 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01802 1 37212811 37216297 Rops1g01802 1 37212811 37216297 ECH
Rops1g01802 1 37212811 37216297 Rops2g04507 2 82376517 82380204 PCT