Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01795 ATGGGAGAGATGTACCAGTTTGACAAGAACCCCTCTTCCTCACAGGACGAAATCTCCCTTTTCCTGCGTCAGATTCTGCTCCGTTCATCTTCTTCTTCCCAGGTCAACAACTCCATGCCTGGATCCTACATTAACGCATCACCGCTCCAAGATGGGAAGATCTCGGCCCTTGATTCCACCGCTGGAGCCACCACTTCAAACCGCGCTTTTCTCTCCACTTCAGCTCAGGCTGGTTCTGCTGCAAACGTGTCTTCCTCGTTTGTAGGAGTCAGTGAAAACGAGACTGATGATTATGACTGTGAAAGTGAGGAGGGTGTTGAAGCATTGGCCGAAGAAGTTCCGACAAAGTCTGTTCCTTCTAGGAGTTCATCAAAACGAAGCAGAGCAGCAGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCCATTGAATACCTTAAACAGCTTCAGCTCCAAGTTCAGATGCTGTCAATGAGAAATGGACTGAGTTTGCATCCCATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAATTGTCTCGGATGAGTATGGAGTTCAGTGAAGGAAACAGGCTGGAATCCCAAATCCCAGCACATATAAGACCTCTTCGACCCGGTAGATCTTCTGAGCCGATACATGGGGATGACATATTGCAGCATCAGCAACCAACTGCAATCTATTCAGATACCAATCCATTAGGTGGTTCTCAAGGTACTTTGGCTACAGTATCACTCTCCTTTGACATGCGCACATCTGAACCTAAGGACAACAATTCCTCTTTGCAAACATGCATTGCTGGAAGAGATCAGTCAGGAGCGATCATAAGAAATAGTGAGCCCAACATTGTTCTTACATCATCGCAGTTAAGTAGGTAA 957 0.4566 MGEMYQFDKNPSSSQDEISLFLRQILLRSSSSSQVNNSMPGSYINASPLQDGKISALDSTAGATTSNRAFLSTSAQAGSAANVSSSFVGVSENETDDYDCESEEGVEALAEEVPTKSVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQLSRMSMEFSEGNRLESQIPAHIRPLRPGRSSEPIHGDDILQHQQPTAIYSDTNPLGGSQGTLATVSLSFDMRTSEPKDNNSSLQTCIAGRDQSGAIIRNSEPNIVLTSSQLSR* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01795 318 MobiDBLite consensus disorder prediction 126 140 - -
Rops1g01795 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 188 IPR036638 GO:0046983
Rops1g01795 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Rops1g01795 318 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 11 242 IPR031066 -
Rops1g01795 318 MobiDBLite consensus disorder prediction 92 140 - -
Rops1g01795 318 SMART finulus 134 183 IPR011598 GO:0046983
Rops1g01795 318 CDD bHLH_AtPIF_like 129 190 IPR047265 -
Rops1g01795 318 Coils Coil 167 187 - -
Rops1g01795 318 Gene3D - 123 187 IPR036638 GO:0046983
Rops1g01795 318 MobiDBLite consensus disorder prediction 94 108 - -
Rops1g01795 318 FunFam Basic helix-loop-helix transcription factor 123 186 - -
Rops1g01795 318 Pfam Helix-loop-helix DNA-binding domain 132 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01795 Rops-Chr1 37109900 37113689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01795 10 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 47.280 3.21e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01795 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01795 - - gmx:100797351 340.502