Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01792 ATGGCGGAAGAGGAGAGTGCATCCAGGAAGCGAAGGTCCAGAGGAGCTGAAGCCACCGTCCGCAGCGAAGCCTTGGAACGCCTCAAGGCTCGCCTCGGTTCCGGTCGCCGATCCGACGCCGCCGGACCCCAAATCAGGTTAGAAAACCCCGTCTACGACACTGTCCCTGAGGAAGAGTACAACGCACTCGTTGCCAAGCGCCGTGAACAGGCACGCGCCTTCATCGTCGACGATGAAGGTCTCGGTTACGGCGATGAAGGTGAGGAAGAGGATTGGTCCAAAGCTGGATTCAACCTCTCCTCTGACGAATCCGACGGCGGAGAATCGGAAAAGCCGAAACGGAAGAAAGATCCTCAGCCTAAACGGCCTTCCTCTTCTGCTGCTTCGCTCTCTGCCGCCGCCGCCATGATGGGCGGGAAGAGGTTGTCGTCGATGTTCACTTCCTCTGTTTTCAAAAAGAGCAGGGACGACAAGGCCTCCGACAGCATCGTTGACGATGTTATCGCGGAGTTTGAGCCGGACGAGACTGATAGACTGAGGCGAAGAAGGGTGCAGGCGAATTCGTCGCATGGCGCCAACGATGTTCAGCGTACTAAGCCATCTGTTGATTCAATTGGAGGTTCTTCGTTGTTCCAAACTTTCGCAAATGGTGAAGCTGAACCAATTAAGGACGTTAAGGACAATGGTTGTGACTTAGGGTTAGAGCAAAAATGTGAAGAAACAGTAAATGAAAGTTCGGAAAATGGCCAGGCACCAGCATCAATTGTGCAACCGAATAATTGCCAAAGTAATGAGGTTTTGGTTGAGGAGAAAGTGGTGAAGGACGTTGAAATGAAAGTGGAACCAGCAATGAAAAAGGAGGGTTTCACTTTGAATGCTAAGGTTGTACCACAAAAGGAGGATCCAGCATTGTGTGCGACCACTGGTTGGCAAGCAGCGAGGAGTGGTGCTGGTGGAGGAGTGGAGATCAATGATGCTGATTCGAAGGATGCTTCGAAAATCCAACAACACACGGAGTTTACTTTGGAGCCAGATGGATCGCTTCCTTTCTACATACTAGATGCCCATGAGGAGTTTTATGGGGCCAATATGGGTACCCTTTATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTCCTTTGCGTTACACTGATGAGATGATGAATCTCGAGAAAGATGTTCAAGAGTCTCGAATTTCTCCTGCAGATTTCCATAAAAAGCTACAAGATGCGGTATCTGATATAAAGAGTGAGATAGCAAATCATCTGGTGGATCTGAATGTTTCTATCTTTAGCATGACACCTGTTAAGAGAAAATATGCATTTGAACGATCTGAAATTCCTGCTGGTGAAAATTATGTGGTGAAAATAAATTATCCATTCAGGGATCCAGTACTTCCAGTAGACATCAAAGGAGAAAGTTTTTGTGCTCTTGTAGGAACTCGTTGCAGTGCACTCGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACCCGCTCAGCTTCTCAAAAGGTTAGCTGGTGCAAATTTGAAGTGACCGTTGACTGTCCTAAAGACATAAGGGTTTCTTCATCTTCCTCAAAAGTCACTTTCGAGATTCCTCCGGTGGTTGTCACAGCCATAAACTTGAAAACCACCATAAATGAAAAACAGAACATAAATGAAATAGTTTCTGCATCTGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAACTTGATGGGAATATTTTTCCACTTGGATTCAGTAAGGAGGTTACGGACAGAAACACAAAAGCTGGGTCAAATGTCCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATGCCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACGATGCCTAAGCTTGACAGAAAAAGCAAGATTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGCATTGCTGGCCGGCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCCTTAAGTCACCTTACAAAAACACAGCTGAACAAGTATCGGGAGGAAGTTGCTCCACATGGCGTTCCAACAATGTTCCAAACAGCAGAATCCCTAATGAAACTTATTGAATTTGGTGAAACGGATGCGTGGTTGTCCATGGAACTCATGTTTCATTTGAGTGCTCTTCCACTCACTCGCCAGCTGACTAACATAAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAGTATCTTTTGCTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTTCAAATCACGCAAAAGAAACAAAATTGATGAAACGCAGAGTAACTCATGGGGTTGACGATGGCAACTTTGACGAAGCAGATATTGATGATGCATCCTTTGATAATGATGCTTCTGAAAGTGATCATAAGAAAAGCAAGAAGGCTGCTTCCTATGCCGGGGGACTGGTTTTAGAGCCAAAGAAGGGTTTATATGACAAATATACATTGCTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTTACAACTGTTGAAAGATCTCTGGATGGATCTTTTCCTCGGCTACCATCCAGTAAAACAACAGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTTGAAAGGAGGAGAAATGTAAAGAAATGGATGAAGAAAGCATCTGGTCTTAAAGTTCAGCAACTGGACATTCAACAGCAAGCACTGAAGCTTACAGCAAACAGTATGTATGGATGCCTGGGATTTCCCAATTCAAGATTTTATGCGAAGCCACTAGCCGAGCTCATAACCCTGCAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAAAGTAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGAAAGCAAAGGCAATGGCTGGAAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTTAAAAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTCAGAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTCTTAGCTAAAGAAGTAGGAGAATTTAGCTTGAAGCAAATTTTGTCAGGAGGGTCATGTGAAGATGTCGTCGAATCAATTCACAGTTATCTCATGAAGGTGCAAGAAGAAATGAGGAACGGACAAGTACCATTGGAAAATTATGTCATCACAAAGACATTGACTAAGCCTCCTGATGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCCTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGCGGTAATTCAGGCAGTGCAACGGGCATTGCTCAACGTGCAAGACATCCTGATGAACTAAAACGAGAACAGGGGACATGGCTGATTGACATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGGCTTTGTGCATCGATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCGTCAAAGTTTCAACAAAAATCAAGTGAAGCTTTAAATGAAGATCCTACGAGCTCACTTTTGTTTGCTGCTGATGATGGGGAGAGGTATCGGGGATGTGAGTTGTTGGTATTGTCATGCCCCAGCTGCTCTGGTACTTTTGACTGCCCACCCGTATTTAAATATATTTGTTTGTTGGGAAGTGAAAAGCCAAACAGCATAAGCACGGAGGAATCTGACTACAATTTCTGGCGTAAGCTGTGCTGCCCAAAATGCCCAGAAAATGGCGTTGGTAGAATTTCTCCCGCAATGATAGCCAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTCAATGTATTATAGAGGTTTACTAATGTGTGATGATGAAATGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGCTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGTAACGGACGTCTCCATAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTTTCATATTTTTGCCACGTGTTTGATACTGATTGTTGTATAGAAAAGATGGAGGCAAAATCTAGGATACCGATAGAGAAAGAGTTGATCAAAATTAGGCCGATGGTTGATCTGGCAGCATCAACAGTACAGAAGATCAGGGACCGTTGTGCCTATGGGTGGGTTAAGCTGCAGGACCTGGTCGTTACAATTTAA 4605 0.4374 MAEEESASRKRRSRGAEATVRSEALERLKARLGSGRRSDAAGPQIRLENPVYDTVPEEEYNALVAKRREQARAFIVDDEGLGYGDEGEEEDWSKAGFNLSSDESDGGESEKPKRKKDPQPKRPSSSAASLSAAAAMMGGKRLSSMFTSSVFKKSRDDKASDSIVDDVIAEFEPDETDRLRRRRVQANSSHGANDVQRTKPSVDSIGGSSLFQTFANGEAEPIKDVKDNGCDLGLEQKCEETVNESSENGQAPASIVQPNNCQSNEVLVEEKVVKDVEMKVEPAMKKEGFTLNAKVVPQKEDPALCATTGWQAARSGAGGGVEINDADSKDASKIQQHTEFTLEPDGSLPFYILDAHEEFYGANMGTLYLFGKVKTGNLYQSCCVVVKNMQRCVYAIPSRPLRYTDEMMNLEKDVQESRISPADFHKKLQDAVSDIKSEIANHLVDLNVSIFSMTPVKRKYAFERSEIPAGENYVVKINYPFRDPVLPVDIKGESFCALVGTRCSALELFLIKRKIKGPSWLQVSNFSTRSASQKVSWCKFEVTVDCPKDIRVSSSSSKVTFEIPPVVVTAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEVTDRNTKAGSNVLCVESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRCQACKVPSSMWSKLGRLNRSTMPKLDRKSKIFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLTKTQLNKYREEVAPHGVPTMFQTAESLMKLIEFGETDAWLSMELMFHLSALPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFSNHAKETKLMKRRVTHGVDDGNFDEADIDDASFDNDASESDHKKSKKAASYAGGLVLEPKKGLYDKYTLLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPELLKNLVERRRNVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFPNSRFYAKPLAELITLQGREILQSTVDLVQSNLNLEVIYGDTDSIMIYSGLDDIEKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFRDGTPYEVIERKGLDIVRRDWSFLAKEVGEFSLKQILSGGSCEDVVESIHSYLMKVQEEMRNGQVPLENYVITKTLTKPPDAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGNSGSATGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDASKFQQKSSEALNEDPTSSLLFAADDGERYRGCELLVLSCPSCSGTFDCPPVFKYICLLGSEKPNSISTEESDYNFWRKLCCPKCPENGVGRISPAMIANQVKRQAEKFVSMYYRGLLMCDDEMCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVFDTDCCIEKMEAKSRIPIEKELIKIRPMVDLAASTVQKIRDRCAYGWVKLQDLVVTI* 1535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01792 1534 MobiDBLite consensus disorder prediction 1 34 - -
Rops1g01792 1534 Pfam DNA polymerase family B, exonuclease domain 380 757 IPR006133 -
Rops1g01792 1534 CDD POLBc_alpha 898 1302 IPR045846 GO:0003887|GO:1902975
Rops1g01792 1534 Gene3D - 350 549 - -
Rops1g01792 1534 Gene3D - 1130 1317 IPR042087 -
Rops1g01792 1534 MobiDBLite consensus disorder prediction 1 53 - -
Rops1g01792 1534 FunFam DNA polymerase 1130 1316 - -
Rops1g01792 1534 FunFam DNA polymerase 1325 1520 - -
Rops1g01792 1534 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 15 1533 - -
Rops1g01792 1534 Pfam DNA polymerase family B 823 1286 IPR006134 GO:0000166|GO:0003677
Rops1g01792 1534 SUPERFAMILY Ribonuclease H-like 345 852 IPR012337 -
Rops1g01792 1534 Gene3D Palm domain of DNA polymerase 892 1116 IPR023211 -
Rops1g01792 1534 FunFam DNA polymerase 564 878 - -
Rops1g01792 1534 SMART polmehr3 564 1066 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops1g01792 1534 MobiDBLite consensus disorder prediction 78 135 - -
Rops1g01792 1534 MobiDBLite consensus disorder prediction 183 204 - -
Rops1g01792 1534 FunFam DNA polymerase 964 1013 - -
Rops1g01792 1534 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Rops1g01792 1534 Pfam DNA Polymerase alpha zinc finger 1327 1530 IPR015088 GO:0003887|GO:0006260
Rops1g01792 1534 CDD DNA_polB_alpha_exo 564 815 - -
Rops1g01792 1534 Gene3D DNA Polymerase alpha, zinc finger 1325 1520 IPR038256 -
Rops1g01792 1534 Gene3D Helix hairpin bin 968 1012 - -
Rops1g01792 1534 NCBIfam DNA polymerase (pol2) 51 1284 - -
Rops1g01792 1534 ProSitePatterns DNA polymerase family B signature. 1054 1062 IPR017964 GO:0000166|GO:0003676
Rops1g01792 1534 PRINTS DNA-directed DNA-polymerase family B signature 1052 1060 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops1g01792 1534 PRINTS DNA-directed DNA-polymerase family B signature 923 936 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops1g01792 1534 PRINTS DNA-directed DNA-polymerase family B signature 999 1011 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops1g01792 1534 MobiDBLite consensus disorder prediction 104 121 - -
Rops1g01792 1534 SUPERFAMILY DNA/RNA polymerases 848 1301 IPR043502 -
Rops1g01792 1534 Gene3D - 390 516 - -
Rops1g01792 1534 Gene3D - 564 876 IPR036397 GO:0003676
Rops1g01792 1534 Coils Coil 1080 1100 - -
Rops1g01792 1534 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01792 Rops-Chr1 37077301 37091478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01792 10 1532 Core DNA Replication Machinery Family AT5G67100 60.996 0.0 1842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01792 K02320 - gmx:100798779 2357.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01792 1 37077301 37091478 Rops1g01792 1 37077301 37091478 ECH