Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01790 ATGCCCGATCATTCCCCTGCCACAATGAACGACCAACTCTCAGACCCAACCTCTATCTTCGGACTCCGTTTATGGGTTGTTCTTGGTGTTTGTGTTGGTGCTGCTATCGTGCTTCTCCTCTTTCTTATATCTGTCTGGCTGGCTTTCAAGCGTTCAAAGACCAAACCTTCCATACCAGATGTTTCCAAAGAGATCCAAGAGATCAGATTGGACCCTCCTATTCAACCCGACCCGTTACCCGAACCCGACCCGGTTCCAGGAAACGAGCTCCAGCTCCAGCTCCAGCTCCTTCAAGAGGAAGACAACAACAATAACAACTCAATGGGGTATAACAGAATTCAGTTTGAGATTGGGAAGAATCATAGGATTTCGTACCCTGAACGTGCTTGTGTTAGGTCTAGTTCCCATGAACACAGTGGTGAGGCTCGACCCATGGATCAGGTTCCTACTGTGATTCCTCAAGTTTCTCACTTGGGTTGGGGACACTGGTATACTCTTAGGGAGCTTGAGGATTCCACTAATGGGTTCTCCCCTGATAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTATCTTGGAGGATAACACTAATGTTGCAATTAAGAATTTGCTTAATAATAGGGGACAAGCTGAGAAAGAGTTCAAGGTTGAAGTGGAAGCTATAGGACGAGTTCGCCACAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCACAGAATGCTTGTGTATGAGTATGTTGACAATGGTAACTTGGAGCAGTGGCTGCATGGGGACGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCAAAAGGGTTAACTTATCTTCATGAGGGGCTAGAACCAAAAGTTGTTCACCGTGATATCAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGAATTCAAAGGTTTCAGACTTTGGCCTTGCCAAACTCCTTGGTTCTGACAGTAGCTATATTACAACCCGTGTCATGGGTACATTTGGATATGTAGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAGCGAAGTGATGTGTATAGTTTTGGAATTCTTATTATGGAAGTAATTACAGGCAGGAATCCAGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTAGTTGACTGGCTCAAGAAAATGGTCAGTAACAGAAATCCAGAGGGAGTGTTGGATCCCAAGCTCCCTGAGAAACCAATTTCAAGGGCGCTAAAGCGAGTCCTTCTTGTAGCCTTACGCTGCACAGACCCTAATGCACAAAAGCGGCCTAAAATGGGACATGTAATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGGGCTAGAAGGGATGCTGGACATTCACCGAACGCTAGAGTAGAGGATGGATTGAAAGAGGAAGCGACTGTATCAGTTGATGATGGTAAGCTTGCCAATGAGACAAGATCAAACCATCAAATAGAAAAGCAATAA 1509 0.446 MPDHSPATMNDQLSDPTSIFGLRLWVVLGVCVGAAIVLLLFLISVWLAFKRSKTKPSIPDVSKEIQEIRLDPPIQPDPLPEPDPVPGNELQLQLQLLQEEDNNNNNSMGYNRIQFEIGKNHRISYPERACVRSSSHEHSGEARPMDQVPTVIPQVSHLGWGHWYTLRELEDSTNGFSPDNVIGEGGYGIVYHGILEDNTNVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNSKVSDFGLAKLLGSDSSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPISRALKRVLLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGHSPNARVEDGLKEEATVSVDDGKLANETRSNHQIEKQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01790 502 Gene3D Transferase(Phosphotransferase) domain 1 252 464 - -
Rops1g01790 502 Pfam Protein kinase domain 179 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01790 502 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Rops1g01790 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Rops1g01790 502 FunFam Probable serine/threonine-protein kinase At1g01540 156 251 - -
Rops1g01790 502 ProSiteProfiles Protein kinase domain profile. 176 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01790 502 SUPERFAMILY Protein kinase-like (PK-like) 151 448 IPR011009 -
Rops1g01790 502 Gene3D Phosphorylase Kinase; domain 1 151 251 - -
Rops1g01790 502 FunFam Putative receptor-like serine/threonine-protein kinase 252 462 - -
Rops1g01790 502 SMART serkin_6 176 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01790 502 MobiDBLite consensus disorder prediction 448 502 - -
Rops1g01790 502 PANTHER OS01G0323000 PROTEIN 7 463 - -
Rops1g01790 502 CDD STKc_IRAK 182 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01790 Rops-Chr1 37064118 37067182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01790 153 450 Trihelix Transcription Factor Family AT1G70460 46.535 5.47e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Rops1g01790 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01790 - - gmx:100797440 834.713