Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01788 ATGGATTGGGTTCGTGGACACTCACTTGGCAGTGGAAGTTTTGCCACCGTTAGTTTAGCAATACCCAAAAACGGTTCTACTCAGTTTCCGTCTTCCACTGCTGTCAAGTCCTCAGATGTTTCCACCTCGTATTTGCTCAAGAATGAGGAACATGTACTCAATCGCCTAGGATCTTGTCCGCGAATTATCGAGTGTTTTGGTCACGATCAAACCTTCGAAGACGGCGAGGAGTATTATAACTTGTTCCTCGAATATGCTTCTGGTGGCACTCTCGCTGATCAGCTCAAGAATCACGGTGGCCGGTTTCCAGAACGTCAAGTTTGTCGATACACGAGGTCCATAGTAGAAGGTCTCAAGTATATTCACACAAAGGGTTTTGCCCACTGTGACGTGAAGCTCCAAAACATTCTCGTTTTCGACAATGACGATGTCAAGATTGCAGACTTCGGACTTGCCAAGGAGAAAGGGGAGAAACAGAGTAAAAAGTGGGAGTGCAGGGGAACTCCGATGTTTATGTCGCCGGAATCAGTGAACGACAACGAGTACGAGTCACCGGCGGACATATGGGCTCTAGGCTGCGCCATCGTGGAGATGCTGACCGGAAAGCCCGCATGGAACCTTCAGAGCGGGTCAAATATATGGTCTTTATTGATTAGAATTGGGGTAGGAGAAGAATTGCCGCTGATTCCGGATGAATTGTCAGAAGAGGGGAAGGATTTTCTAGCAAAGTGTTTCGTTAAGGATCCGAGGAAGAGATGGAGCGCAGAGATGCTTTTGAAGCACCCCTTTATCGCCTATGAAACTGTTTCATTCGAGAGAGTCAAAGAGCCATTGCCATCACCAAGAACACACTTTGATTTCCCTCATTGGGATTCCACTGTAACGGCTTCGCTGCCGTCTTCACCGGCTTCCGAGGAGTGGCATAAACAGGATTTCGTGTCTGGCCTATGTTCGCCGGTGAAACGGCTCCGGCGGCTGGTGACGGATCAGGGACCAACGGATTGGTCAGAATCGGATAGCTGGATTACTGTTAGGTAA 1038 0.4865 MDWVRGHSLGSGSFATVSLAIPKNGSTQFPSSTAVKSSDVSTSYLLKNEEHVLNRLGSCPRIIECFGHDQTFEDGEEYYNLFLEYASGGTLADQLKNHGGRFPERQVCRYTRSIVEGLKYIHTKGFAHCDVKLQNILVFDNDDVKIADFGLAKEKGEKQSKKWECRGTPMFMSPESVNDNEYESPADIWALGCAIVEMLTGKPAWNLQSGSNIWSLLIRIGVGEELPLIPDELSEEGKDFLAKCFVKDPRKRWSAEMLLKHPFIAYETVSFERVKEPLPSPRTHFDFPHWDSTVTASLPSSPASEEWHKQDFVSGLCSPVKRLRRLVTDQGPTDWSESDSWITVR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01788 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Rops1g01788 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Rops1g01788 345 CDD STKc_MAPKKK 2 264 - -
Rops1g01788 345 SUPERFAMILY Protein kinase-like (PK-like) 3 303 IPR011009 -
Rops1g01788 345 Pfam Protein kinase domain 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01788 345 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01788 345 Gene3D Transferase(Phosphotransferase) domain 1 2 297 - -
Rops1g01788 345 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01788 345 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Rops1g01788 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01788 Rops-Chr1 37024728 37026045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01788 1 345 MAP Kinase Kinase Kinase AT4G36950 53.736 1.16e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops1g01788 Pkinase 7.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01788 - - gmx:100782937 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01788 1 37024728 37026045 Rops1g01788 1 37024728 37026045 ECH
Rops1g01788 1 37024728 37026045 Rops2g04530 2 82725528 82726913 PCT