Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01786 ATGATGGCCCTTGAAAATTCAGAAAATATGCAAATAAACTGTGAGACATCTCGAAGATGCCTCCATGGCAAGGGACTCCCTTACAGTTTTAAGTGTAATGGGTTTTCTAACTTGATTTGGGTTAGGCCTGCATCTGAATTTGTCATGTCAAAGGATTCTTTCAAGTCCTTCTTGGGTAGGCCTTGGAAAAAGTACTCAAGGACTTTGTTTCTTAAAACTGATTTAGATGGGTTGATTCATCCAAAAGGGTGGAGTGAATGGAGTGGAAACTTTGCAACCTCAACTTTGTACTATGGAGAGTATATGAACACTGGCAATGGTGCTTCTACACACAATAGGGTGAATTGGCCTGGTTTCTATGTGCTAAATAGTGCTTATGAGGCCTCACCCTTCATAGTGAGTCATTTTCGGCAAGGTGTAATATGGATTCCAACTTCAGGGGTGCCTTTTTGGTCTAGAATTTAA 465 0.4065 MMALENSENMQINCETSRRCLHGKGLPYSFKCNGFSNLIWVRPASEFVMSKDSFKSFLGRPWKKYSRTLFLKTDLDGLIHPKGWSEWSGNFATSTLYYGEYMNTGNGASTHNRVNWPGFYVLNSAYEASPFIVSHFRQGVIWIPTSGVPFWSRI* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01786 154 Gene3D - 40 154 IPR012334 -
Rops1g01786 154 SUPERFAMILY Pectin lyase-like 53 151 IPR011050 -
Rops1g01786 154 PANTHER PECTINESTERASE 47 144 - -
Rops1g01786 154 Pfam Pectinesterase 42 139 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01786 Rops-Chr1 36989760 36992044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01786 41 150 Carbohydrate Esterase AT3G60730 68.182 1.62e-48 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01786 K01051 - gmx:100792852 185.652