Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01785 ATGGATGAAGACATATTGAAAACTTCAGAGAGTGATGATAGCAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACACTCTCAACTACTCAGAGAACGAGTTCTCGGGTGGAAGCTCCAGCCCCACTCTTCCCGTGTTCTCCAACGTTAACCCAAATGTAATTCCACCAACTTTGATTAATCCACCACCTTCCTCTTCAAATTTCATTAACAATTCCCTGCAACAACCAATGATACCGTCCCGTCAACCCAAAGAGATTCCATCAGGGAGGGTCAGGATTCCCAATGCTTCATTTACATACCCTTCATCAGAGAAAAAAAGTTCTATGGCTACCATGAGAGAGATGATTTTTCGAGTAGCAGTTATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCACCAAAGAGAAGGAATGTGAAGATTTCCAAGGATCCTCAGAGTGTGGCAGCGAGACATAGAAGAGAAAGAATAAGCGAGAGAATAAGGATCCTGCAGAGATTAGTTCCTGGTGGGACGAAAATGGACACGGCTTCTATGTTAGATGAAGCCATACACTATGTGAAGTTCTTAAAAAAACAAGTGCAGACTCTGGAACAAGCAGGAGCAACTAGACCCTTGAATATTGTTGGCTACCCAGGAGTGTCAAATTCCAATGTCAATTATTCTGCTTTCGTTAGGGGTTGCCAACCTTGTCAAATGGGTTCTACTTCAAAACAAATGCTTAGTTGA 768 0.418 MDEDILKTSESDDSSMDMMAMMMQMEKFPELCEPFYNTLNYSENEFSGGSSSPTLPVFSNVNPNVIPPTLINPPPSSSNFINNSLQQPMIPSRQPKEIPSGRVRIPNASFTYPSSEKKSSMATMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLNIVGYPGVSNSNVNYSAFVRGCQPCQMGSTSKQMLS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01785 255 MobiDBLite consensus disorder prediction 91 117 - -
Rops1g01785 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 213 IPR036638 GO:0046983
Rops1g01785 255 FunFam BHLH transcription factor 157 220 - -
Rops1g01785 255 Pfam Helix-loop-helix DNA-binding domain 164 203 IPR011598 GO:0046983
Rops1g01785 255 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 239 IPR045843 GO:0003700|GO:0006355
Rops1g01785 255 CDD bHLH_AtIND_like 155 211 - -
Rops1g01785 255 SMART finulus 160 209 IPR011598 GO:0046983
Rops1g01785 255 Coils Coil 193 213 - -
Rops1g01785 255 Gene3D - 153 219 IPR036638 GO:0046983
Rops1g01785 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01785 Rops-Chr1 36981223 36981990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01785 12 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 50.228 2.03e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01785 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01785 - - gmx:100796649 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01785 1 36981223 36981990 Rops1g01785 1 36981223 36981990 ECH