Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01783 ATGGAGCAACGAAAGCTTGTGGTTTTGGGTATTCCGTGGGACGTTGATACTGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGAATTGGAAGATTGCATTGTCATGAAGGAGAGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCATTGGATGATGCTAAGGAAGTATTATCAAGCGAACATATTCTTGGTAATAGGATGCTGGAAGTCAAAGTGGCTACACCAAAGGAGGAGATGAAGGCACCGGTCAAAAAAGTTACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAACAACTTTTAGAAGTCATTTTGAGAAGTATGGTGAGATAACAGATTTGTACATGCCAAAGGATCAGGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTTGCAAGTGCAGAATCTGTGGAGAACTTGATGTCTGAAACCCATGAACTGGGAGGTTCTACTGTGGTGGTTGATAGAGCTACACCTAAGGACGACGACTTTAAGCCGATTGGCAGAATGTCACAGGGAGGATATGGCGCATACAATGCTTATATTTCTACAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTGCTCGTAGAATTAGTAAAAAGATTTTTGTCGGTCGTCTTCCCCCGGAAGCATCTGCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCCAAAGATCCTAAGAGAACAGGTCATCGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACAACAGGTGGCAATAGATTCAGCCACACCTGTTGACGATGCTGGGCCCAGTGGGAATTTTATGATGAATAGTATGGATTCTTTTGGGGGATATGGCGGTCCTATGCGATCTTATGGGAGGATGTATGGTGGCGGCTTAGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGACCATCAAGAGCAGACTGGAGGTATAGACCATACTAG 1083 0.4358 MEQRKLVVLGIPWDVDTEGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASLDDAKEVLSSEHILGNRMLEVKVATPKEEMKAPVKKVTRIFVARIPQSVTETTFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASAESVENLMSETHELGGSTVVVDRATPKDDDFKPIGRMSQGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPARRISKKIFVGRLPPEASAEDLRQYFGRFGRILDVYVPKDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPVDDAGPSGNFMMNSMDSFGGYGGPMRSYGRMYGGGLDFDDWGYGIPSGRPSRADWRYRPY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01783 360 Gene3D - 84 174 IPR012677 -
Rops1g01783 360 FunFam RNA-binding family protein isoform 1 221 304 - -
Rops1g01783 360 SUPERFAMILY RNA-binding domain, RBD 88 187 IPR035979 GO:0003676
Rops1g01783 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Rops1g01783 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Rops1g01783 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Rops1g01783 360 Gene3D - 220 304 IPR012677 -
Rops1g01783 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Rops1g01783 360 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Rops1g01783 360 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 222 332 - -
Rops1g01783 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Rops1g01783 360 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Rops1g01783 360 SMART rrm1_1 5 76 IPR000504 GO:0003723
Rops1g01783 360 SMART rrm1_1 93 164 IPR000504 GO:0003723
Rops1g01783 360 SMART rrm1_1 225 296 IPR000504 GO:0003723
Rops1g01783 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Rops1g01783 360 SUPERFAMILY RNA-binding domain, RBD 223 324 IPR035979 GO:0003676
Rops1g01783 360 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Rops1g01783 360 Gene3D - 1 83 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01783 Rops-Chr1 36924771 36929926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01783 6 273 Eukaryotic Initiation Factors Gene Family AT2G36660 24.088 1.14e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01783 K14411 - gmx:100795240 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01783 1 36924771 36929926 Rops1g01783 1 36924771 36929926 ECH