Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01777 ATGTCTCAACGATCGGCGCCGGCGCCGTTCTTGACGAAGACGTATCAGTTGGTGGATGATCCGGCGACGGACGAGCTCAATACCTATGGATTCCGAAAGATCGTGCCAGACAAATGGGAATTCGCGAACGAAAATTTCAAGCGAGGCCAAAAGGAGCTCCTCTCCGAAATCAAACGCCGCAAGACCGTCGTCCCCCAACCGTCGGCACAACCTCCGGAGGCCGGAAAATCGGGCACCGACGGCAACTCTCCGTCGAACTCCGGCGGCGACGACGTGCGATCCAGCTCAACCTCATCCTCTGGTTCGAAAAACCCAGGATCGGTGGAAACAACAACAACAGCTCCTCAATGCGCGAATTTATCGAGCGAGAACGAGAAATTGAAGAAAGATAACGAAACACTGAGTTGGGAGCTGGCACGTGCGAAGAAACAGTGCGATGAGCTGGTAGCTTTTCTTAGGGACCGTATGAAAGTGGGTCCCGATCAAATCGATCAAATCATGCAGCGTGGATCTAATGAGAACGCGGTAGGTGAAGGTGAAGAAAGTGGAGGAGACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAGAGAAGAATTTTCCAGAGAAAAGAAACAACAACAATCAGAAGAGAGGCCTCGAAGACCAAATGGGCCTTGGTGGGCCTCACGCTAAAGTGCCAAAGACTGTTGTTGACTTTGGTGCTGTTAAATGTTAA 714 0.5056 MSQRSAPAPFLTKTYQLVDDPATDELNTYGFRKIVPDKWEFANENFKRGQKELLSEIKRRKTVVPQPSAQPPEAGKSGTDGNSPSNSGGDDVRSSSTSSSGSKNPGSVETTTTAPQCANLSSENEKLKKDNETLSWELARAKKQCDELVAFLRDRMKVGPDQIDQIMQRGSNENAVGEGEESGGDCLKLFGVWLKEKNFPEKRNNNNQKRGLEDQMGLGGPHAKVPKTVVDFGAVKC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01777 237 Gene3D - 110 156 - -
Rops1g01777 237 MobiDBLite consensus disorder prediction 72 122 - -
Rops1g01777 237 Gene3D - 23 61 IPR036388 -
Rops1g01777 237 Pfam HSF-type DNA-binding 25 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g01777 237 MobiDBLite consensus disorder prediction 57 128 - -
Rops1g01777 237 MobiDBLite consensus disorder prediction 201 220 - -
Rops1g01777 237 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 25 IPR027725 -
Rops1g01777 237 SMART hsfneu3 6 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g01777 237 SUPERFAMILY "Winged helix" DNA-binding domain 6 60 IPR036390 -
Rops1g01777 237 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01777 Rops-Chr1 36806778 36809277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01777 2 195 HSF AT4G36990 45.600 1.34e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops1g01777 HSF_DNA-bind 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01777 K09419 - gmx:100791543 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01777 1 36806778 36809277 Rops1g01777 1 36806778 36809277 ECH