Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01757 ATGGGTATCTGCACTTCAAAACCCACTATTTCTTCTGATACTCACTCACCCAGGAACAACGAAGCACCGTCTTCCTTCACAGTTAATCTTAGTGTTGAAGGTGAACCTCACGCGAGCTCCATCAATGGCGAAAACCCTAAAAATGAGAAGGAAGATGGGGAAAACGGTAAAAGATCTCCCTTTTTCCCGTTTTACAGTCCGAGTCCGGCGCACCATTTGTTCTCTAAGATGTCACCGGCGAACGGGTTGCGGTTTTTCAAGCGGCCGTTTCCGCCGCCGTCTCCGGCGAAGCACATAAGGGCTGTGCTGGCTCGGCGACATGGTTCGGTGAAGCCTAATGAGGCTGCGATACCCGAAGGTAGTGAAGGGGAGGACGTTGCGGATCTCGACAAGAACTTCGGATTCTCCAAACATTTCGGAAGTAAATATGATGTTGGAGATGAGGTTGGGAGAGGCCATTTTGGGTACACTTGTGCTGCCAAGGTTAAGAAAGGAGAACTCAAAGGCCAACAAGTTGCCGTCAAAGTCATTCAAAAAGCCAAGATGACCACTGCCATTGCTATTGAGGATGTGAGAAGGGAAGTAAAAATACTGAGAGCTTTGAATGGGCACAAGAATCAAATACAATTCTATGATGCTTATGAAGACCATGATAATGTCTATATAGTAATGGAATTGTGTGAAGGAGGAGAGCTGTTGGACAGAATATTATCAAGAGGTGGGAAATACACAGAGGAAGATGCAAAAGCTGTCCTGAGACAAATACTGAGTGTTGTTGCTTTTTGCCATCTGCAGGGTGTTGTTCATCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAACAATGAGAACTCGGAGCTGAAGGCCATAGACTTTGGGTTGTCGGATTTTGTTAGACCAGATGAAAGACTTAATGATATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTACAGTACAGAGGCTGACATCTGGAGTATTGGAGTGATTGCGTATATTTTATTATGTGGAAGCCGTCCATTTTGGGCTCGGACTGAGTCTGGTATTTTTCGTGCTGTATTGAAAGCTGATCCAAGTTTCGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAAGGAGTTTTGTTAAGCAATTACTACATAAAGATCCACGGAAAAGAATGAGTGCAGCACAGGCATTAAGTCATCCATGGATAAGAAACTATAAGGATGTAAAAGTACCTATGGATATTCTAATATTCAAGCTCATGAAGACATACATGCGTTCCTCATCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAGACGTTAACTGTGGATGAGCTATGTTATTTGAAGCAGCAGTTTGCACTGTTAGAGCCAAACAAAAACGGCACCATCAGCTTGGAAAATATCAAAGCGGCCTTGATGATAAACGCAACAGATGCTATGAAGGAGTCACGTATTCCAGACTTTTTGGCATCACTTAATGCATTGCAATATAGAAGGATGGATTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGACCACTGGGAGCAACATGCACGTTGTGCCTATGACCTTTTTGAAAAGGATGGAAACAAGGCTATAGTCATTGAGGAACTGGCTTCGGAGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTTCATGACTGGATTCGGCACACTGATGGAAAGTTGAGCTTCCTTGGTTTTGTGAAATTGTTGCATGGCCCATCAAGAAGTCTTGTGAAAGCTCAATAG 1791 0.4405 MGICTSKPTISSDTHSPRNNEAPSSFTVNLSVEGEPHASSINGENPKNEKEDGENGKRSPFFPFYSPSPAHHLFSKMSPANGLRFFKRPFPPPSPAKHIRAVLARRHGSVKPNEAAIPEGSEGEDVADLDKNFGFSKHFGSKYDVGDEVGRGHFGYTCAAKVKKGELKGQQVAVKVIQKAKMTTAIAIEDVRREVKILRALNGHKNQIQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLRQILSVVAFCHLQGVVHRDLKPENFLFTSNNENSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSDEARSFVKQLLHKDPRKRMSAAQALSHPWIRNYKDVKVPMDILIFKLMKTYMRSSSLRKAALRALSKTLTVDELCYLKQQFALLEPNKNGTISLENIKAALMINATDAMKESRIPDFLASLNALQYRRMDFDEFCAAALSVHQLEALDHWEQHARCAYDLFEKDGNKAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLVKAQ* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01757 596 ProSitePatterns Protein kinases ATP-binding region signature. 149 175 IPR017441 GO:0005524
Rops1g01757 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Rops1g01757 596 SUPERFAMILY Protein kinase-like (PK-like) 140 434 IPR011009 -
Rops1g01757 596 PANTHER SERINE/THREONINE-PROTEIN KINASE 127 571 - -
Rops1g01757 596 MobiDBLite consensus disorder prediction 1 43 - -
Rops1g01757 596 Gene3D Transferase(Phosphotransferase) domain 1 232 421 - -
Rops1g01757 596 ProSiteProfiles Protein kinase domain profile. 143 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01757 596 Pfam Protein kinase domain 143 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01757 596 FunFam CDPK-related kinase 3 135 307 - -
Rops1g01757 596 Gene3D - 445 514 - -
Rops1g01757 596 FunFam CDPK-related kinase 1 441 514 - -
Rops1g01757 596 MobiDBLite consensus disorder prediction 1 62 - -
Rops1g01757 596 CDD STKc_CAMK 142 404 - -
Rops1g01757 596 SUPERFAMILY EF-hand 433 587 IPR011992 -
Rops1g01757 596 FunFam CDPK-related kinase 1 136 231 - -
Rops1g01757 596 FunFam Calcium-dependent protein kinase SK5 315 410 - -
Rops1g01757 596 Gene3D - 423 584 - -
Rops1g01757 596 SMART serkin_6 143 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01757 596 Gene3D Phosphorylase Kinase; domain 1 136 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01757 Rops-Chr1 36460506 36465830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01757 1 596 EF-hand Containing Proteins AT3G50530 74.491 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops1g01757 Pkinase 6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01757 K00924 - gmx:100794177 978.008