LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g01753	ATGCGTTGGTTGCACACCCTCGTTTTCTCCCCTTCTTCCCATGCTTCTTCTTCTCATTCTTCTTCTCCTTCTCCTTCTCCGGCGACTCTTAAATCCTCCCCTTCCACCTCCTCCCTCCCCGACCCTAGGAAGAACACCCGCACCGCCTGGTTTTTCGGTAGTAGCAAAAAGTCCACGCGCTCAAGGAGGCTCCGCCATGTCGACGCCGATCACGATGCCCGGTGGCATCCGCATGACTCTGAATACGACGCCGTCGTGGCTCCTATCTCTCGTTCTCCCAGCACCAGCAGCCACATTCGCTCCAATACCACCTCCTCCGTTGCACCTCAACCCTTACCATTGCCGGAGATATCATCCTCCTCGCTGCTCCGCCATAGAGACGCCGACTTCCGTTTGCCGTCTCCCAAAGATGCCTCCGCCACCTCCACCACCTCCACCACCTCCACCAGAGTCCCAGAACCTGATGCCACCTCTCAGGACACAACCGCCACCACTGGCTTTCGGATGCGAAGTGTTTTTGCTAGACAAGAGACAAGAAAGAATAATATGGAGCACGCGGAGACAAGGTCACCTGGGACGAGTGGTTCTTCTTCTTCAACTGCAAGAGGAAACTTCTCGATCAACGTCCCTGCTAGGAGTGCACCTAGTAGTCCTTTTGCAAGTCCCAGAATAAGCCCAATGAATGATGATTTTGTGCCTTATTATTATGTCTCACCCAAAGGGAATCAGTTTTGGTCTGCACCTGAGATGCCCATTTCTGAAGCATCAGCTAACCAGCCACCTCCAGCTTTCTTTGATTTATCCACTGATAATGCTACTTCTCCTCATCATCAAAGTCCACATGGAAAAAGTTCCATGCACAACCCTAAAAGCCCAACAACTAGACCTTCTTCACCCTTACCCATGTTATCTCTTGACACCTCAACTGTACGTCGTGAGAGTAATGCTGCTCCTCTTACTGTTCATCCTTTACCTTTGCCTCCTTGGCCTGGGACACCCTTGCCATCACCCTCTGCTAATTATTCCCAACCTGGGCCTAAGACTGAATCCTTGTCGATGAAAATCCAATGGCAAAAAGGGAAACTTATAGGGAGAGGTACTTTTGGAAGTGTTTATGTTGCCACCAATAGGGAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAGTCCGCAGAGTGTATAAAGCAGTTAGAGCAGGAAATTAAGGTTCTTAGCCATCTGAAACATCCAAACATTGTTCAGTATTATGGTAGTGAAATAGTAGAAGACAAGTTTTATATTTATTTGGAATACGTCCATCCGGGTTCAATAAATAAATACGTTCGGGAACATTGTGGCGCGATAACAGAATCTGTTGTTCGGAATTTCACGCGCCATATTCTTTCGGGGTTGGCTTACTTGCATAGCAAGAAAACAATTCATAGGGACATCAAAGGGGCCAACTTGCTTGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGAATGGCCAAGCATCTAACTGGACATGCTACCGATCTTTCTTTGAAGGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAATCGGTTATACAAAAAGATAACAGCTCTGATCTAGCTTTTGCTGTTGATATTTGGAGTTTGGGTTGTACAATTATTGAGATGTTCACGGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCTGCAGCTATGTTTAAGGTTATGAAGGATACCCCTCCTATACCTGAAACATTGTCATCAGAGGGTAAAGATTTCCTGAGGCATTGCTTTATAAGAAATCCAGCAGAGCGGCCAACTGCTTCAATGTTACTAGAGCATCGATTTCTGAAAAACTTTCAACAGCCAGAGGTTTCATCTTCCTCCCAGCTGTATAATGGATCAACCTTGATGGATAATACTCATAGTCCCAGAGGGTTATCTGAAAACAAACCTGATCAGATTTCTATTCCCAATGCACAGATTGGGAAAGGGAAATTAGCCACTGAGAGTGGCATTGCAGTACCCTACTCGCTTCACTCTTGA	2049	0.4675	MRWLHTLVFSPSSHASSSHSSSPSPSPATLKSSPSTSSLPDPRKNTRTAWFFGSSKKSTRSRRLRHVDADHDARWHPHDSEYDAVVAPISRSPSTSSHIRSNTTSSVAPQPLPLPEISSSSLLRHRDADFRLPSPKDASATSTTSTTSTRVPEPDATSQDTTATTGFRMRSVFARQETRKNNMEHAETRSPGTSGSSSSTARGNFSINVPARSAPSSPFASPRISPMNDDFVPYYYVSPKGNQFWSAPEMPISEASANQPPPAFFDLSTDNATSPHHQSPHGKSSMHNPKSPTTRPSSPLPMLSLDTSTVRRESNAAPLTVHPLPLPPWPGTPLPSPSANYSQPGPKTESLSMKIQWQKGKLIGRGTFGSVYVATNRETGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSHLKHPNIVQYYGSEIVEDKFYIYLEYVHPGSINKYVREHCGAITESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGHATDLSLKGSPYWMAPELMQSVIQKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPIPETLSSEGKDFLRHCFIRNPAERPTASMLLEHRFLKNFQQPEVSSSSQLYNGSTLMDNTHSPRGLSENKPDQISIPNAQIGKGKLATESGIAVPYSLHS*	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	262	315	-	-
	Rops1g01753	682	ProSitePatterns	Protein kinases ATP-binding region signature.	363	386	IPR017441	GO:0005524
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	9	57	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	90	117	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	321	340	-	-
	Rops1g01753	682	SUPERFAMILY	Protein kinase-like (PK-like)	356	644	IPR011009	-
	Rops1g01753	682	SMART	serkin_6	357	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g01753	682	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	15	631	-	-
	Rops1g01753	682	FunFam	Mitogen-activated protein kinase kinase kinase 5	354	655	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	628	658	-	-
	Rops1g01753	682	Pfam	Protein kinase domain	358	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	136	171	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	628	664	-	-
	Rops1g01753	682	Gene3D	Transferase(Phosphotransferase) domain 1	354	652	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	252	349	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	90	224	-	-
	Rops1g01753	682	ProSiteProfiles	Protein kinase domain profile.	357	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	1	65	-	-
	Rops1g01753	682	MobiDBLite	consensus disorder prediction	187	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g01753	Rops-Chr1	36410255	36419973	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g01753	202	640	MAP Kinase Kinase Kinase	AT5G66850	64.946	0.0	590

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Rops1g01753		Pkinase	2.4e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g01753	-		-	psat:127120353	838.565